<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17893

Description Uncharacterized protein
SequenceMDMDSRGDYSVERNEHRELLRKKNTIMSMEVLAKLMESRKAVVLLRLVHFNMPEKFHGLLQRLWFSEANKLASSSMKPASQFFERFSASIRNVCDFEYQLNKGQLVRMLTDIRQPNKRLSYCNSESVQSACWAPFDIYLEHIMDGKQLLITSGVSMLTETIMLLQVFNRASWQETFLALWLSALRLVQREHDPLEGPIPHLESRLCILLTIVPLAIANIMDDEAKFCSSSLQGAAKSGFIEIDGHENQVDGKGQTSRKNGLISSLQVLGQFSGLLCPPASVIGAANAAAVKAASFISNSKSARGDSVCGTHSDSDINAGGNLRHLIIEACIARKLIDTSVYYWPGYVSASVISFIDLPPAQKSPWVIFMEGTPFSNSLVNFLLATPAPSLAEIEKLYDIALNGSVEERSAAAKILCGASLSRGWNIQEHVLHYVVKLLSPPKPSTHTGQRNHLIDYMPMLSAILSGASSIDTVHVLSLHGLIPEVAASLMPLCEVFGSLMPTSSNISSKGDEPSIYMVFSSAFLFLLRLWKFYRPPIEQCLTGGGAIGGELTLEYLLLLRNGRIASHNYSAQDEINSNQVQHEYSSDKPEYVDFYPKLRAWYCQNKSCIASPLSGISTGNPVHEVANKILNMIYRKMTKSGSSSGNSSTVTSNSLCGSSPSTAEDPYQRPMLPAWDVLEAIPFVLEAILTACAHGRLSSRDLTTGLRDLIDFLPATLGTIVTYFAAEITRGIWKPVPMNGTDWPSPAAILSAVDSEIKEILAAAGVDFPCGSSGQSPPMLPLPMAALVSLTITFKLNKSHEYIHAVVGPALENCSSGCPWPSIPIIGSLWAQKVRRWHHFIVVSCARSVLKRNKVAVAQLLRSCFSSFLGSLNDSTSLLTNQSSVSRLLGTTIAVPGVSPSLAPGFLYLRSCRTIEDIQYVNGVVIGLVTEYARELATRWTGMDSSRLKSSQASLSHAAAKAREVAILGASLLCLSGGMNLIQELYLETIPTWLLSSKKEKLGEVSAVSRILEGYAMAYMVVLSGSALWGIGPTPPAWALSRRARVVGVHMDFLVRVLEGNISLGCHPATWKAYVSCVVGLVVSFAPAWIQVVKLETLRKLASGLRGWHESELALSLLERGGVAAMGSVAELLNVIS
Length1137
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.08
Grand average of hydropathy0.131
Instability index49.63
Isoelectric point8.06
Molecular weight123913.79
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17893
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.77|      42|      47|     968|    1014|       1
---------------------------------------------------------------------------
  970- 1014 (56.78/49.68)	ASLLCLSGgMNLIqELYlETIPTWLLSSKKEKLG.EVSAVSRILEG
 1018- 1060 (67.99/38.00)	AYMVVLSG.SALW.GIG.PTPPAWALSRRARVVGvHMDFLVRVLEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.57|      17|     154|     920|     940|       2
---------------------------------------------------------------------------
  920-  937 (26.26/26.80)	YVnGVVIGLVTEYA............RELA
 1074- 1102 (22.31/ 7.45)	YV.SCVVGLVVSFApawiqvvkletlRKLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.44|      15|     154|      70|      84|       3
---------------------------------------------------------------------------
   70-   84 (27.72/18.15)	KLASSSMKPA..SQFFE
  225-  241 (23.72/14.32)	KFCSSSLQGAakSGFIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     155.31|      57|     155|     646|     713|       4
---------------------------------------------------------------------------
  646-  673 (39.09/22.26)	....................................................................................NSSTV.....TSNSLCGSSPSTAED.PYQRPMLP
  681-  781 (60.16/31.31)	IPFvleaILTACAHGRLSSRDLTTG..LRDLID.FLpatlgtivtyfaaeitrgiwkpvpmngtdwpspaailsavdseikeilAAAGV.......DFPCGSS...GQS.P...PMLP
  838-  910 (56.06/24.33)	HHF....IVVSCARSVLKRNKVAVAqlLRSCFSsFL.....................................gslndstslltNQSSVsrllgTTIAVPGVSPSLAPGfLYLR....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.79|      24|      49|     106|     152|       6
---------------------------------------------------------------------------
  106-  132 (36.01/57.11)	VRMLTD...IRQPNKRLSYcnSESVQsACW
  154-  180 (38.78/11.95)	VSMLTEtimLLQVFNRASW..QETFL.ALW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17893 with Med33 domain of Kingdom Viridiplantae
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