<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17892

Description Uncharacterized protein
SequenceMQLQEPPAAASQNPNPPSSADAPPKQVALAMERLGQASRLIADVRLGADRLLEALFIAAVPHQSNKPLQLFVKEDASMRQHLQDLRSVGRQLEESGVLNETLRSRSNSWGLHLPVVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDEGQDVQSTEPASKKHCIPKDLLLNYQEELSDCKTLSDVLTCLEKEMLNLKVLTYERLDWFKRASSLPASASENPLDTSKDHGFHSLSKLRTVSQSAAATDKIAVIELFFPSVFRAIISLHPAGSIDPDAVAFFSPDEGGSYIHARGFSVHHVFRKISEHAAMALQHFLGVSSRTALYSIVHWICCYQTLFTKVCSKCGKLLAMDRKSMLLLPPVYRPYLHFSTLQIASTQTNSSAKDHGLENLGAFHIGCFTEEL
Length417
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.07
Grand average of hydropathy-0.183
Instability index44.48
Isoelectric point8.05
Molecular weight46111.22
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17892
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     189.24|      54|     155|     187|     248|       1
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  145-  177 (18.72/17.64)	...............LALKAFTDQKRRFFPHldegqdvQSTEP.ASKKH..............
  194-  248 (89.27/59.56)	CKTLSDVLTCLEKEMLNLKVLTYERLDWFKR.......ASSLP.ASASENPlDTSKDHGFHSL
  356-  405 (81.25/48.98)	CSKCGKLLAMDRKSMLLLPPVYRPYLHF...........STLQiAS.TQTN.SSAKDHGLENL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17892 with Med27 domain of Kingdom Viridiplantae
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