<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17891

Description Uncharacterized protein
SequenceMKSVSLDYWRDYFRTASSDIFGIIDHAILVAASDCPKEFKLRRDRIAERLFSCRLIKCSGCNQVELAVPGHDEDERDDRGCCSKRRDGDNSGSDDDEEEVDIDIDDGGFEYEGGGSKESKVNSSNRDNDFDNGEVNVNDQLVSNFSFGEAEALTDEIEEVSQTVDEVLRIKDILYNSQDESDSVLLESLRKLRLMALTVDTLKATEIGKAVNGLRKHGSEQIRHLARTLIEDWKVLVDEWYSAANVIRGNEGTPDSVNPSVVDEEEGLPSPPLDEGAFFATQPTSMELSQFFDGMDDDGNPRNNGEFIKNHVSRRRPSAENQNISKQKQQTPKGANMPSKDNESQQMRKQEDVVKASKPSNANSGPGRPLKQNVEQKMNQETVLIRKTDKVTSQRKPPTGQQDKLKSSDEVAVQMKLEATKRKLQERYQQAEKAKRQRTIQVMELHDLPKQGHVQKNQPMRLGNHNRHWAHGRR
Length474
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.05
Grand average of hydropathy-0.993
Instability index42.55
Isoelectric point5.34
Molecular weight53584.69
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17891
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.46|      13|      26|     266|     278|       1
---------------------------------------------------------------------------
  266-  278 (24.55/14.57)	EGLPSP..PLDEGAF
  293-  307 (20.91/11.30)	DGMDDDgnPRNNGEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.63|      20|      24|     317|     336|       3
---------------------------------------------------------------------------
  317-  336 (36.84/21.03)	PSAEN..QNISKQ....KQQTPKGAN
  338-  363 (26.79/13.64)	PSKDNesQQMRKQedvvKASKPSNAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.03|      20|      24|      88|     107|       4
---------------------------------------------------------------------------
   88-  107 (35.98/17.72)	GDNSGSDDDEEEVDIDIDDG
  114-  133 (33.05/15.74)	GGSKESKVNSSNRDNDFDNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.10|      23|      26|     394|     417|       5
---------------------------------------------------------------------------
  394-  417 (34.60/25.42)	QRK..PPTGQQDKLKSSDEVAVqMKL
  421-  445 (33.50/19.66)	KRKlqERYQQAEKAKRQRTIQV.MEL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17891 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ERDDRGCCSKRRDGDNSGSDDDEEEVDIDIDDGG
2) IRGNEGTPDSVNPSVVDEEEGLPSPPLDEGAFFATQ
3) TSMELSQFFDGMDDDGNPRNNGEFIKNHVSRRRPSAENQNISKQKQQTPKGANMPSKDNESQQMRKQEDVVKASKPSNANSGPGRPLKQNVEQKMNQETVLIRKTDKVTSQRKPPTGQQDKLKSSDEVAVQMKLEATKRKLQERYQQAEKAKRQRTIQVMELHDLPKQGHVQKNQPMRLGNHNRHWAHGRR
75
247
284
108
282
474










Molecular Recognition Features






MoRF SequenceStartStop




1) HNRHWAHGRR
2) VLRIKD
3) YWRDYFR
465
167
8
474
172
14