<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17887

Description Uncharacterized protein
SequenceMDANNWRLTAPGGEPVMDTGDWRTQLQPDSRQRIVNKIMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQNTIPTGNGNKPLDPGASHSMPPQVHNQGQSLPISLSSNQPQARQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSSLTQTIANTVGQNANMQSISGVSQNPVGNLMGQGIPSNMFVNSQRQMPGRQQVVPPQQQQQSQNPQQYLYQQQIQQQLLKQKLQQGNHPHSLVQSHIHQQQQQQNLLQPNQLQSGLQTSTVMQPSMMQTVSGLQQNQPSSVQQSTQPMLQQHPQSVLRQQQQPQQSAGIHQQQTPMMQQPLLPPQQQLMGQQSNTTNMSQNQLIGQQNIVGDLQQQQLGQQNNLQNLQQQQLMAQQNNLSSMHQQQLGPQSNVTGLRQQQLLGAQPASLDSTAEIGHANGADWQEEIYQKIKVMKETYLPEINELYQRIATKLQQHDPLPQQPKSEQLEKLKVFKVMLERLITFLQVSKNNITPNFKEKLGFYEKQIVGFLNPSRYRKPIPNLQQGQPPQPRIQPMQQPQSQVPQLQSHENQLIPQLQSMNTQGSVPQMQQNNMSSLLHNFLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTKINTLSTQSGGSMLQPNIPLQSNSNMIQHQHLKQQQQQQQQHEQQMLQTQQLKRFQQHQNLMQNQQMQQQQLHQQAPSPMPGDSDKPVSGISSLLNTGNIVHQPSVAQALAPSLAIGTPGISASPLLAEFTSPDGAHGSALTTVSGKSNVTEQSLECLIKAVKSLSPKALSASVGDIGSVVSMIDRIAGSAAGNGSRAAAGEDLVAMTGCHLLSFLSFLFFTCFSQHGNSRE
Length894
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.03
Grand average of hydropathy-0.724
Instability index67.36
Isoelectric point9.31
Molecular weight98712.85
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17887
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     236.74|      27|      27|     382|     408|       1
---------------------------------------------------------------------------
  337-  364 (41.90/ 9.59)	HQQQTPMMQQPLLPP.qQQLMGQQ..SNTTN
  365-  393 (41.52/ 9.42)	MSQNQLIGQQNIVGDlqQQQLGQQ..NNLQN
  394-  422 (39.52/ 8.54)	LQQQQLMAQQNNLSSmhQQQLGPQ..SNVTG
  550-  575 (38.20/ 7.95)	LQQGQ.PPQPRIQPM..QQPQSQV..PQLQS
  688-  711 (36.34/ 7.13)	MIQHQHLKQQQ...Q..QQQQHEQ..QMLQT
  717-  744 (39.24/ 8.41)	FQQHQNLMQNQQMQ...QQQLHQQapSPMPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.72|      16|      16|     116|     131|       2
---------------------------------------------------------------------------
  116-  131 (25.27/ 6.24)	PQVHNQGQSLPISLSS
  223-  238 (27.44/ 7.62)	PQQQQQSQNPQQYLYQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     257.66|      41|      55|     591|     631|       3
---------------------------------------------------------------------------
  142-  182 (35.91/ 8.39)	......QNMQNSMS...S...NGVQSSAGlqsampsVSSLTQTIANT.VGQNAN
  184-  213 (43.61/11.98)	QSI..SGVSQNPVG.......N....LMG.......QGI.PSNMF...VNSQRQ
  286-  321 (45.89/13.05)	STVmqPSMMQT.VS...GLQQNQPS............SVQQST..QPmLQQHPQ
  591-  631 (75.14/26.68)	GSV..PQMQQNNMS...SLLHNFLSTLSG.......DSTSQSNMMNP.IQPGSN
  649-  687 (57.12/18.28)	GSV.....QQNLVSisqPTKINTLSTQSG.......GSMLQPNI..P.LQSNSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.35|      15|      17|     452|     468|       4
---------------------------------------------------------------------------
  452-  466 (26.95/11.37)	EEIYQKI..KVMKETYL
  470-  486 (20.39/ 9.83)	NELYQRIatKLQQHDPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.06|      18|      18|     762|     779|       6
---------------------------------------------------------------------------
  762-  779 (30.42/16.94)	IVHQPSVAQALAPSLAIG
  783-  800 (31.64/17.91)	ISASPLLAEFTSPDGAHG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.51|      15|      26|     239|     253|       7
---------------------------------------------------------------------------
  239-  253 (25.93/ 8.98)	QQIQQQLLKQKLQQG
  262-  276 (26.57/ 9.41)	SHIHQQQQQQNLLQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.22|      23|      26|     497|     522|       9
---------------------------------------------------------------------------
  497-  522 (33.04/29.84)	KLKVFKvmlERLITFLQVSK.NNITPN
  526-  549 (37.17/24.37)	KLGFYE...KQIVGFLNPSRyRKPIPN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17887 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LKQKLQQGNHPHSLVQSHIHQQQQQQNLLQPNQLQSGLQTSTVMQPSMMQTVSGLQQNQPSSVQQSTQPMLQQHPQSVLRQQQQPQQSAGIHQQQTPMMQQPLLPPQQQLMGQQSNTTNMSQNQLIGQ
2) MDANNWRLTAPGGEPVMDTGDWRTQLQPDSRQRIVNKIMETL
3) METKSQNTIPTGNGNKPLDPGASHSMPPQVHNQGQSLPISLSSNQPQARQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSSLTQTIANTVGQNANMQSISGVSQNPVGNLMGQGIPSNMFVNSQRQMPGRQQVVPPQQQQQSQNPQQ
4) QQQQLGQQNNLQNLQQQQLMAQQNNLSSMHQQQLGPQSNVTGLRQQQLLGAQPASLDSTAEIG
5) RKPIPNLQQGQPPQPRIQPMQQPQSQVPQLQSHENQLIPQLQSMNTQGSVPQMQQNNMSSLLHNFLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTKINTLSTQSGGSMLQPNIPLQSNSNMIQHQHLKQQQQQQQQHEQQMLQTQQLKRFQQHQNLMQNQQMQQQQLHQQAPSPMPGDSDKPVSGISSLL
246
1
89
381
544
373
42
234
443
757










Molecular Recognition Features






MoRF SequenceStartStop




NANANA