<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17885

Description Uncharacterized protein
SequenceMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQNTIPTGNGNKPLDPGASHSMPPQVHNQGQSLPISLSSNQPQARQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSSLTQTIANTVGQNANMQSISGVSQNPVGNLMGQGIPSNMFVNSQRQMPGRQQVVPPQQQQQSQNPQQYLYQQQIQQQLLKQKLQQGNHPHSLVQSHIHQQQQQQNLLQPNQLQSGLQTSTVMQPSMMQTVSGLQQNQPSSVQQSTQPMLQQHPQSVLRQQQQPQQSAGIHQQQTPMMQQPLLPPQQQLMGQQSNTTNMSQNQLIGQQNIVGDLQQQQLGQQNNLQNLQQQQLMAQQNNLSSMHQQQLGPQSNVTGLRQQQLLGAQPASLDSTAEIGHANGADWQEEIYQKIKVMKETYLPEINELYQRIATKLQQHDPLPQQPKSEQLEKLKVFKVMLERLITFLQVSKNNITPNFKEKLGFYEKQIVGFLNPSRYRKPIPNLQQGQPPQPRIQPMQQPQSQVPQLQSHENQLIPQLQSMNTQGSVPQMQQNNMSSLLHNFLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTKINTLSTQSGGSMLQPNIPLQSNSNMIQHQHLKQQQQQQQQHEQQMLQTQQLKRFQQHQNLMQNQQMQQQQLHQQAPSPMPGDSDKPVSGISSLLNTGNIVHQPSVAQALAPSLAIGTPGISASPLLAEFTSPDGAHGSALTTVSGKSNVTEQSLECLIKAVKSLSPKALSASVGDIGSVVSMIDRIAGSAAGNGSRAAAGEDLVAMTGCHLLSFLSFLFFTCFSQHGNSRE
Length856
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.03
Grand average of hydropathy-0.711
Instability index68.39
Isoelectric point9.32
Molecular weight94363.03
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17885
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     122.87|      24|      26|     314|     337|       1
---------------------------------------------------------------------------
  314-  337 (46.43/13.68)	QQQLMGQQSNTTNMSQNQLIGQQN
  343-  366 (44.08/12.49)	QQQQLGQQNNLQNLQQQQLMAQQN
  372-  394 (32.36/ 6.63)	HQQQLGPQSNVTGLRQQQLLGAQ.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     228.60|      37|      37|     195|     231|       2
---------------------------------------------------------------------------
   88-  124 (38.67/ 6.12)	PISLSSNQPQ..A...RQQL...SQ.NMQNSMssngVQSSAG.LQSA
  195-  231 (68.18/16.32)	QQYLYQQQIQ..QQLLKQKL...QQGNHPHSL....VQSHIH.QQQQ
  271-  291 (39.76/ 6.49)	QQS..TQPM..........L...QQ..HP........QSVLR.QQQQ
  580-  616 (38.84/ 6.17)	SQSNMMNPIQpgSNL...DS...GQGNALSSL....QQTPVGsVQQN
  662-  692 (43.15/ 7.66)	QQQQHEQQM.....LQTQQLkrfQQ..HQ.NL....MQN....QQMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.82|      14|      37|     503|     519|       3
---------------------------------------------------------------------------
  173-  186 (27.48/ 6.82)	QR...QMPGRQQVVPPQ
  503-  519 (24.35/ 9.49)	SRyrkPIPNLQQGQPPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.31|      15|      37|     694|     711|       4
---------------------------------------------------------------------------
  694-  708 (29.62/10.84)	QQLHQQAPSPMPGDS
  758-  772 (20.69/11.82)	DGAHGSALTTVSGKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.35|      15|      17|     414|     430|       5
---------------------------------------------------------------------------
  414-  428 (26.95/12.91)	EEIYQKI..KVMKETYL
  432-  448 (20.39/11.18)	NELYQRIatKLQQHDPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     131.66|      29|     110|     126|     154|       6
---------------------------------------------------------------------------
  126-  145 (26.16/ 7.24)	..........PSVSSLTQTIANTVGQN..ANM
  146-  168 (33.96/11.94)	Q.SISGVSQNP........VGNLMGQGipSNM
  526-  551 (39.68/15.38)	Q.QPQ..SQVPQLQSHENQLIPQL.QS..MNT
  552-  578 (31.87/10.68)	QgSVPQMQQN.NMSSLLHNFLSTLSGD..S..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.04|      12|     438|     298|     312|       9
---------------------------------------------------------------------------
  298-  312 (15.86/11.59)	IHqQqtPMMQQPLLP
  725-  736 (21.18/ 6.06)	VH.Q..PSVAQALAP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17885 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LKQKLQQGNHPHSLVQSHIHQQQQQQNLLQPNQLQSGLQTSTVMQPSMMQTVSGLQQNQPSSVQQSTQPMLQQHPQSVLRQQQQPQQSAGIHQQQTPMMQQPLLPPQQQLMGQQSNTTNMSQNQLIGQ
2) METKSQNTIPTGNGNKPLDPGASHSMPPQVHNQGQSLPISLSSNQPQARQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSSLTQTIANTVGQNANMQSISGVSQNPVGNLMGQGIPSNMFVNSQRQMPGRQQVVPPQQQQQSQNPQQ
3) QQQQLGQQNNLQNLQQQQLMAQQNNLSSMHQQQLGPQSNVTGLRQQQLLGAQPASLDSTAEIG
4) RKPIPNLQQGQPPQPRIQPMQQPQSQVPQLQSHENQLIPQLQSMNTQGSVPQMQQNNMSSLLHNFLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQQNLVSISQPTKINTLSTQSGGSMLQPNIPLQSNSNMIQHQHLKQQQQQQQQHEQQMLQTQQLKRFQQHQNLMQNQQMQQQQLHQQAPSPMPGDSDKPVSGISSLL
208
51
343
506
335
196
405
719










Molecular Recognition Features






MoRF SequenceStartStop




NANANA