<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17878

Description Uncharacterized protein
SequenceMASTGDSLFRLLTVAPRSRELSGTVDLISHYQLREPFEAICKKPLPTSISDSKYLSNVVGDSEIRRGDDMELGQLIQGPAGSSMPSDRVPFQPFDIEVLRRAFALKESGPISLPESERGLPIIRSKSKHQDDEKKKRKHKHRSKDRDKDKDKERKKDRDKDKKRDKDKDKDRSKGENGEKKHKKKKRRHDGEDGDDGHKHKSKKHKHSSKVEGQTVLIKNGK
Length222
PositionHead
OrganismPhyscomitrella patens subsp. patens (Moss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Bryophyta> Bryophytina> Bryopsida> Funariidae> Funariales> Funariaceae> Physcomitrium.
Aromaticity0.03
Grand average of hydropathy-1.449
Instability index55.50
Isoelectric point9.82
Molecular weight25405.43
Publications
PubMed=18079367
PubMed=29237241

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
transcription factor binding	GO:0008134	IBA:GO_Central

GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17878
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.71|      17|      17|     138|     154|       1
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  124-  141 (25.39/ 6.79)	RSKSKHQDDEKKK..rKHKH
  142-  159 (24.69/ 6.43)	RSKDRDKDKDKER..kKDRD
  188-  207 (25.63/ 6.91)	RHDGEDGDDGHKHkskKHKH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17878 with Med19 domain of Kingdom Viridiplantae
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