<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17876

Description Uncharacterized protein
SequenceMQRKLRLKKDSEDDSNCPQNNFSEYLYRFQDPLKLRETLKAGFLFSLPGQNPNAAGGPGTCLRLTKFVHQPLDQQLKHVASQAWKSLSSPPVIPKNRVQPGVTGPIDASSAQKFVTGSSYQPKQSFSNYGKGGDDANSKFHTKDAGRKLENQSSSCMSKFGTHEGQSDTLLRNKSPQTTGPQNFGPAPVPSDKFFDEQSARGCLSTNANASSADFFSNHVPGLPPRQTPTNSSNSHFRGNRQRDGALTPAFSMPNHSNVDLQPEHLPNRSKSEKYIPFEEDDDDLLQAIDLDQIVSEHYVKSCSQQSTQVTNRVGSTTPPSVQSKVRGSLEDVVKAENAASAHKLCSHGVEVHCCGEAGFHLQEMKDKLIYIINELLDNGDELSPERVQELRLERTELNKDIKALEEAFKNPTSLMNQCRSNFPPATPYNAFGSGHPSNQQNVFSTPTGPAADYFNPASARPTYGLSSSTAPSGGGLTDFRQPSFTPVPWENNTGANQASGGFPSSFDSNGPRVGLQVQGGPPRFVDVNYSEGSSEMQFSKNDFPWSRDLVVNNKKFFGNKSFRLNQREIINATMSGRDVFVLMPTGGGKSLTYQLPAICSAGVTLVVSPLVSLIMDQIMHLSEANIPAAYLSGTMEWQEQNEILRNLDAGVYKLLYVTPEKIARSDRLSQHLTSLYDQRLLARIVVDEAHCVSQWGHDFRPDYQNLGVFKERFPDVPLIALTATATLSVKEDVVRALKLTRCIIFRQTFNRPNLRYEVLPKSKKCLEDIDKFIRERHPNESGIIYCLSRSDCEKVTEKLREFGHKVAFYHGQMDPDERSYVQRMWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSLEGYHQESGRAGRDNLPASCILYYTYADSIRLKHMLTQGAAELGSTGSSFRNHNTVTSNQLSTNLDNLNRMIGYCQNDIDCRRSLQLAHFGEMDFDVSSCKGTCDNCARMGNSGSVEEDVSETARQLVQLVGAMGQRSSMTHIVDVFRGSLNQQVKKMGHDQLDLHGAGKKFTKTEVERIMQQLLTGNIFREDVNKSDYYGGLSSIIKVNEMQARELVSGRLKISIRFRAAKKPDRPERSETPAKKSSLPVGLRTPAQDEVVSVPQAPVDPMLSSKVFSALQRLRIVLVNEAGGDLMPYHIMGNGELQSISKKLPKTTEELLEINGIGKVKSKKYGARILEVVAQTVNEHLSGGEDVSFDNGNSGSATASKRRREVEDGGWKNTRKNTAAEVGRNYNDIENGFRQDTMQQTTKKAKVPPAFVQPLSTSKFENENNYFEEEEDIYEDMPEGFLDNY
Length1315
PositionUnknown
OrganismPhyscomitrella patens subsp. patens (Moss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Bryophyta> Bryophytina> Bryopsida> Funariidae> Funariales> Funariaceae> Physcomitrium.
Aromaticity0.08
Grand average of hydropathy-0.615
Instability index44.05
Isoelectric point7.18
Molecular weight146162.28
Publications
PubMed=18079367
PubMed=29237241

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17876
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.29|      20|      22|     206|     225|       1
---------------------------------------------------------------------------
  206-  225 (36.86/16.10)	TNANASSADFFSN.HVPG.LPP
  228-  249 (27.44/10.37)	TPTNSSNSHFRGNrQRDGaLTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.14|      23|      23|     407|     429|       2
---------------------------------------------------------------------------
  407-  429 (44.50/27.04)	EAF..KNPTSLMNQCRSNFPPATPY
  430-  454 (38.64/22.41)	NAFgsGHPSNQQNVFSTPTGPAADY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.66|      20|      23|     935|     957|       3
---------------------------------------------------------------------------
  935-  957 (34.28/32.85)	CQNDID.CRRslqLAHFGEMDFDV
  960-  980 (34.39/23.50)	CKGTCDnCAR...MGNSGSVEEDV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.29|      18|      23|     149|     171|       4
---------------------------------------------------------------------------
  151-  168 (33.86/23.28)	NQS..SSCMSKFGTHEGQSD
  173-  192 (29.43/ 6.76)	NKSpqTTGPQNFGPAPVPSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.89|      23|      25|      94|     116|       5
---------------------------------------------------------------------------
   63-   88 (21.92/11.31)	...RLTKFVHQPLDqqlkhvASQAWKSLS
   94-  116 (41.57/29.41)	PKNRVQPGVTGPID......ASSAQKFVT
  122-  142 (37.39/25.56)	PKQSFSNYGKGGDD......ANS..KFHT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.46|      23|      24|     473|     495|       6
---------------------------------------------------------------------------
  473-  495 (44.70/28.39)	SGGGLTDFRQPSFTP.VPWENNTG
  500-  521 (32.87/18.66)	SGGFPSSF..DSNGPrVGLQVQGG
  532-  549 (26.89/13.74)	EGSSEMQFSKNDF....PWSRD..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.48|      28|      28|     790|     817|       7
---------------------------------------------------------------------------
  790-  817 (51.46/38.63)	RSDCEKV..TEKLREFGHKVAFYHGQMDPD
  819-  848 (45.02/32.78)	RSYVQRMwsKDEVNIICATVAFGMGINKPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.45|      23|     678|     327|     357|       9
---------------------------------------------------------------------------
  327-  357 (36.48/37.61)	RGSLEDVVKaenaasahKLCSHGVEVHCCGE
 1008- 1030 (41.97/25.56)	RGSLNQQVK........KMGHDQLDLHGAGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.18|      19|     788|     362|     380|      10
---------------------------------------------------------------------------
  362-  380 (33.18/26.07)	LQEMKDKLIYIINELLD.NG
 1167- 1186 (26.99/19.66)	LQSISKKLPKTTEELLEiNG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17876 with Med34 domain of Kingdom Viridiplantae
Unable to open file!