<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17874

Description Uncharacterized protein
SequenceMCKLLSLYALSSEKYKHAAPEGVIRFPRKAHGHGFTSWIPCSGTGQPQGKLQDYFDKISGKMTSLETKTNGNPLQRPASGLPGARGEAPGVPGVPGSGASQMRNIAGLRNVAQLGTQQHLQQQQQQLQQLQQQQQFLTQSLQANGASGIQATVSGLTSNLPGVASVSQNPMSGIGGQVMNSTIMSNRLQQMQHQRQSVQHQQVSQHQQQIFFLLERRVCFHGSELPAVSCFVPCRVINSNNCCISSSSNIRQQFRNRNCKCNSNSNSSHFSNTSSINRCYISLSFYRLPTITSSTFYQLSSLNRQQQPVSQLLVQSNAALQQQQLLQQQLLQSKQQQWCSLLLLWFRNNNNNSSSRPLHLLYHNSHSNYNLLFNSLVSRVRLDSSGMGQINNHSTVLDSQEVCISNTNSSSNSSRETCHFKPNSSRQICHFKPNSSMQFLSTLQTVPKEVNQDKGDAFEKQILSIVETFKRRRQPQPTAPGGPASPAPPPAPQAVAQPVPVQHPDQVNVPQASHPQPPQVNSQPVLPIPSNNQGIQSVQQQQQQQQLLSQMQQEKQIQRQQLTGVGPQATGSMFRPTNNAQSPLQHNPGVLQQTLAGTLLQSTVVPTLQPVGAAMPTSSTGLIGENGLIGLMYPAMYAIRHESTAARCSSQFGINTYQQSPNNTLQQNGGSVTSLPRQNNAIQQQQEQPAVTSSTRPATAPSSAAGCFVLFYVQDMQQRQLQQQQQRQLNHQNNQAVQLQGFGVLLTGTPSQTIRIPSPSTVSATPATQDEADHQGPTPATNSTIPCTMQALQTAIRSTGPINTPGMSVSPLMENTLSPSPGQLLTVHDAVQTFSPGLPLIDGTISTEHSLEQLKKKVDSMPKEILKEAVNALNDVVSCGDKLEGSAPGTGSRAAIGEDLSAKTRSTIQARAISHDTRNAATKRRRVDSIAVNMISADGTISNALHRHRYNTHVGNHMVSHINSPLLKITESLEEEIRYINSRSIDTVVEVSTEATEENASQGWNGIVLSCCYKGNALSPNVSYLQAKEYALLSRTSLYLTVLPTYPACSPHVWFDNSNPQAMGAQEEFMRSLLRMASPLPLATIATSWDECARKSLSMLISKGVATSPLRMERGRQPIRSHVNRFLKCVSFLPSNRDTVVLQVCWL
Length1147
PositionTail
OrganismPhyscomitrella patens subsp. patens (Moss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Bryophyta> Bryophytina> Bryopsida> Funariidae> Funariales> Funariaceae> Physcomitrium.
Aromaticity0.05
Grand average of hydropathy-0.480
Instability index64.28
Isoelectric point9.42
Molecular weight125397.77
Publications
PubMed=18079367
PubMed=29237241

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17874
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     530.90|      83|      83|     447|     529|       1
---------------------------------------------------------------------------
   84-  139 (53.20/17.29)	.....................................ARGEAPGV.......PG.V......PGSG.....ASQMRNiaglRNVAQ...LGTQQHLQQ....QQQQLQ...QLQQQQqflT.Q........................
  142-  209 (37.67/ 9.93)	.................................QANGASGIQATVsgltsnlPG.VasvsqnPMSGiggqvMNSTIM....SNRLQ.....QMQH..QRQsVQHQQVS...QHQQQ...............................
  304-  337 (30.16/ 6.37)	......................................RQQQPVS.......QL.L......VQS.................NAA..........LQQQQ.LLQQQLL...QSKQQQ..............................
  447-  529 (141.92/59.35)	P...KEVNQDKGD......AFEKQI...LSIVETFKRRRQPQPTA.......PG.G......PASP.....APPPAP....QAVAQ...PVPVQHPDQVN.VPQASHP...QPPQVN...S.QPV..................LPIP
  532-  616 (92.56/35.95)	NqgiQSVQQQQQ.........QQQL...LSQMQQEKQIQRQQLT.........GvG......PQAT.....GSMFRP....TNNAQ...S.PLQHNPGV..LQQTLAGtllQSTVVP...TlQPV.................gAAMP
  661-  759 (105.30/41.99)	P...NNTLQQNGG......S....V...TSLPRQ.NNAIQQQQEQ.......PA.V......TSST.....RPATAP....SSAAGcfvLFYVQDMQQRQ.LQQQQQR...QLNHQN...N.QAVqlqgfgvlltgtpsqtirIPSP
  766-  839 (70.09/25.30)	P.....ATQDEADhqgptpATNSTIpctMQALQTAIRSTGPINT........PG.M......SVS.........PLM....ENTLS...PSPGQLLTVHD.AVQTFSP...GLP.................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     114.48|      21|      24|     234|     254|       2
---------------------------------------------------------------------------
  234-  254 (37.07/17.68)	CRV.INSNN..CCISSSSNIRQQF
  259-  280 (34.70/16.09)	CKCnSNSNS..SHFSNTSSINRCY
  396-  414 (22.70/ 8.04)	..V.LDSQE..VCISNTNSSSNSS
  418-  438 (20.02/ 6.25)	CHFkPNSSRqiCHFKPNSSMQ...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.74|      21|      21|     916|     936|       3
---------------------------------------------------------------------------
  916-  936 (34.90/27.44)	D.TRNAATKRRRVDS.IAVNMIS
  938-  960 (26.83/19.13)	DgTISNALHRHRYNThVGNHMVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.47|      31|     270|     354|     391|       5
---------------------------------------------------------------------------
  354-  391 (39.99/47.58)	SSRPLHLLYhnsHSNYNLLFNSLVSRVrldSSGMGqIN
  625-  655 (56.49/38.24)	ENGLIGLMY...PAMYAIRHESTAARC...SSQFG.IN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.22|      18|      25|      29|      52|       6
---------------------------------------------------------------------------
   35-   60 (19.41/23.05)	FTSwIPCSGTGQPqgkLQdyfdKISG
   62-   80 (28.81/ 7.15)	MTS.LETKTNGNP...LQ...rPASG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17874 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GTPSQTIRIPSPSTVSATPATQDEADHQGPTPATNSTIPCTMQALQTAIRSTGPINTPGMSVSPLMENTLSPSPGQLLTVHD
2) KLQDYFDKISGKMTSLETKTNGNPLQRPASGLPGARGEAPGVPGVPGSGASQMRNIAGLRNVAQLGTQQHLQQQQQQLQQ
3) QILSIVETFKRRRQPQPTAPGGPASPAPPPAPQAVAQPVPVQHPDQVNVPQASHPQPPQVNSQPVLPIPSNNQGIQSVQQQQQQQQLLSQMQQEKQIQRQQLTGVGPQATGSMFRPTNNAQSPLQHNPGVLQQ
4) TYQQSPNNTLQQNGGSVTSLPRQNNAIQQQQEQPAVTSSTRPAT
748
50
461
656
829
129
593
699










Molecular Recognition Features






MoRF SequenceStartStop




NANANA