<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17873

Description Uncharacterized protein
SequenceMQPSWKAVMEVTKTAMAQNDFPLVWGTDLVTCIHKHGIGLPSVELSSVLVHCLVTNASYASSTATIWTYIQHAMSCQMVSVLHMLALLTSRILPSRHQQPENYRMYLELTSTFVFSLSSTKLMLCRDRVVKAVDEALQLSNSPDTPITEVGIVIVHFLFALMARLAESVYEDWKSNEGSIHGRTMESGTAGHEEKHEMGLEQLKKTNSLAAVHLMAKIIQNKRTADLLRIARRNLQDQWTLFVQRLQLLESLTNDPSSKAPKEAMDALGQLANAIQQGLHQEWRSSQMPVIHALLPSSCRSSSFGNAGGLGYSSPWLPFDIYMEAAMEGRRLSQRSNAEILADVMKAMQSVHAANWVDLFLGLWTAGLRLVKRDRESMEGPNTHVESRLCMLLSILPLAAGIVIEEEERGQPHPENISGDDKDRKIPGGRRAALETCLQVLGQFESLLVPPTAAVTAANQVAAKVAAFVSTGGQKMNVEISNSGKSAVGTMRHLIVDSCVSRGLLDNSAYFWLVTGGQLANIPSSPSQPSPWSVFMDGAPFSGSLRVALMSCPAGSVAELEKVYKTAIVGPEEERAAAASILCGASLIRSWNVQEYAVHFAVQLLSPPVAENWGGNSNPLIGHAPMLYAALQGMNTADAMNVLSLFGMFPELAASLLPICEVFGSLSNSKPVATVAGEDVTAHMLFSVAFLQLVKLWKFHRPPLEHCLLGSGASLGADLSLEYLLQLRNMQLASPSDRFGKQRMQVLGSTYTPSSGSVVSLDSFPRLQIWYMQHQACISATVSGLLRNNPMHQVGDRLLAMMFKKVNKSSPGPTPGISGSPSEDVSGRPILCAWDIIAAVPNVLEYSLTACAHGSLSPRDLTTGLRELVDYLPGAIATIVSYCSAETTRGLWKYASMNGQDWPSPAANLLTIQGEVKDILAAVGVHIPNPTGSGGGNAPVSLPLPLAALIGLTITFKLDRAGDTLLSVAGPGLESCSGAGPWFSMQVVAALWAQKVRRWHDYIVFISSCSVFKHNKPAMLQLLKSCFAVTLSSSPSLGSKLQMNGGVGALLGSWSAYGPEPVAPGIVYLRSYVFFHDIMFLSDEILILVAEAARELGTQGDFNKESLVGLGSRLRCVQASLPNSMARAVQASSLGASLLYVSGGAILVAKLFTDSIPTWFLSGKGSKGIHSTGGLILEGYAIAHFVLLSGALAWGVSGSSAVHLQAENTGIPSQIQRHYVLGAHMDFLASGLGGEIFISCEQTLWRSYVVGFLALMVTCTPMWILELKLDTLQKLATGLRFWHEHDLAVALLERGGPSAMGAAAELILC
Length1309
PositionTail
OrganismPhyscomitrella patens subsp. patens (Moss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Bryophyta> Bryophytina> Bryopsida> Funariidae> Funariales> Funariaceae> Physcomitrium.
Aromaticity0.07
Grand average of hydropathy0.166
Instability index44.84
Isoelectric point6.54
Molecular weight140933.14
Publications
PubMed=18079367
PubMed=29237241

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17873
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|    1168.76|     247|     247|     570|     816|       1
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  103-  327 (118.68/65.80)	.....................................................................................................YRM.YLELTSTF.........VF......SLSSTKlmlcrdrvvkavdealqlsnspdtPITEV.G.IVIVHFLFAlMARLaeSVYEDWKSNEG.SIHGRT..MESGT.A...................GHEEKHEMgLeqlkktnslaavhlmakiiqnkrtadllriarrnlqdqwtlfvqrLQLLESLTN.DPSSKAPKEAMDALGQLANAiQQGL.......HQEWRSSQMPVIHALLPSSCRSSSfgnAGG......LGYSSP.WLPFDIYMEAAM...................
  329-  567 (224.71/132.39)	.......GRRLSQRSNAEIL..ADV...MKA...MQ..SV.HA...AnwVDLF....LGLWTA....GLR.LVKRD...RESMEGPNTHVESRLC....MLLSI.LP.LAAGIVIEEE....ERGqphpeNISGDD........................KDRKIPGG........................RRA.ALETCLqvLGQFE.SLlvpptaavtaanqvaakvAAFVSTGG................................................QKMNVEISnSGKSAVGTMRHLIVDSCV...SRG..........LLDNSAYFWLVTGGQLANIPSS...PSQpspwsvFMDGAP.FS..GSLRVALMscpagsvaeLEKVYKTA..
  570-  812 (403.44/244.63)	.......GPEEERAAAASILCGASL...IRSW.NVQEYAV.HF...A..VQLLSPPVAENWGG....NSNPLIGHAPMLYAALQGMNTADAMNVL....SLFGM.FPELAASLLPICE....VFG.....SLSNSK........................PVATVAGEDVTAHMLFS.VAFL..QLVKLWKFHRP.PLEHCL..LGSGA.SL..................GADLSLEY.L.............................................LQLRNMQLA.SPSDRFGKQRMQVLGSTYTP.SSGS.......VVSLDSFPRLQIWYMQHQACISAT...VSG......LLRNNP.MHQVGDRLLAMM.........FKKVNKSSPG
  813- 1036 (270.16/160.93)	P.TPGisGSPSEDVSGRPILCAWDI...IAAVpNVLEYSLtAC...A..HGSLSP...RDLTT....GLRELVDYLPGAIATIVSYCSAETTRGLwkyaSMNGQdWPSPAANLLTIQ.......G.....EV...K........................DILAAVG........................VHIPnP....T...GSGG.G...................NAPVSLPLpL.............................................AALIGLTIT.FKLDRAGDTLLSVAGPGLES.CSGAgpwfsmqVVAALWAQKVRRWH.DYIVFIS.S...CSV......FKHNKPaMLQ....LLKSC.........FAVTLSSSPS
 1061- 1222 (151.77/86.58)	PvAPG....................ivyLRSY..VFFHDI.MFlsdE..ILILVAEAARELGTqgdfNKESLVGLGSRLRCVQASLPNSMARAVQ....A......SSLGASLLYVSGgailVAK.....LFTDSI........................PTWFLSGKG..SKGIHS.TGGL..IL......EGY.AIAHFV..LLSGAlAW..................GVSGSSAV.H.............................................LQAENTGI...PSQ...IQRHYVLG...........................................................................................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17873 with Med33 domain of Kingdom Viridiplantae
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