<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17869

Description Uncharacterized protein
SequenceMDTRWRKFLNGAGADIWTVIDNVLDIAATDYPHELRIRRDGFVEKLFAHPALLSKSNGCLPVVACHDVEEAHDDKGVDPPDYDYDHVRTELSDDEDRLVNSTEEYDEAEALNDAMEEEARQTLEVLRVKDILADSSQDESAILTALRTLEDMHISVEALKQTEIGKEVNALRKHPSKRVRSLAKDLVRSWKDLVDEWVKSAGDVAAAAAADSAGVDNGEEGLPSPPLDPGALLASTRANSIEMSHFFDDFLDDLSAGSGPSPPSSNGACDDIVAPLSKRQQQSRGPTASPESQAPKNKGRINTSNSHHEIRNGDGRSIQSNGRKAFDTPNGIDRSAHGISRGNSGPGRPVDRSGPPKAVGNGTVRKFETKPPVPKDNKPKPVQKNSQEPEENVSVSARLEVAKRRMHERYEQENNAKRQRVVQVMELTELPKGGPQRAKVGQGHGHGPAKPSIANRFRYQQIRR
Length464
PositionUnknown
OrganismPhyscomitrella patens subsp. patens (Moss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Bryophyta> Bryophytina> Bryopsida> Funariidae> Funariales> Funariaceae> Physcomitrium.
Aromaticity0.04
Grand average of hydropathy-0.841
Instability index56.10
Isoelectric point5.85
Molecular weight50952.84
Publications
PubMed=18079367
PubMed=29237241

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17869
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.84|      15|      15|     342|     356|       1
---------------------------------------------------------------------------
  324-  338 (21.02/ 8.46)	KAFDTPNGIDRSAHG
  342-  356 (30.50/15.21)	GNSGPGRPVDRSGPP
  360-  372 (21.33/ 8.68)	GN.GTVRKFE.TKPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.60|      17|      31|      95|     111|       2
---------------------------------------------------------------------------
   73-   91 (21.12/ 9.83)	DDKGVDPPDyDYDHVRTeL
   95-  111 (27.07/14.44)	EDRLVNSTE.EYDEAEA.L
  129-  143 (22.41/10.83)	KDILADSSQ...DESAI.L
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.48|      16|      17|     252|     267|       3
---------------------------------------------------------------------------
  252-  267 (29.08/13.80)	DDLSAGSGPSPPSSNG
  270-  285 (24.40/10.49)	DDIVAPLSKRQQQSRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.80|      15|      17|     293|     307|       4
---------------------------------------------------------------------------
  293-  307 (26.10/18.30)	QAPKNKGRINTSNSH
  309-  323 (25.70/17.90)	EIRNGDGRSIQSNGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.70|      21|      31|     383|     403|       5
---------------------------------------------------------------------------
  383-  403 (32.67/26.91)	QKNSQEPEENVSVSARLEVAK
  412-  432 (34.03/28.36)	QENNAKRQRVVQVMELTELPK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17869 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LDDLSAGSGPSPPSSNGACDDIVAPLSKRQQQSRGPTASPESQAPKNKGRINTSNSHHEIRNGDGRSIQSNGRKAFDTPNGIDRSAHGISRGNSGPGRPVDRSGPPKAVGNGTVRKFETKPPVPKDNKPKPVQKNSQEPEENVSVSARLEVAKRRMHERYEQENNAKRQRVVQVMELTELPKGGPQRAKVGQGHGHGPAKPSIANRFRYQQIRR
251
464










Molecular Recognition Features






MoRF SequenceStartStop




1) KVGQGHGHGPAKPSIANRFRYQQIRR
439
464