<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17868

Description Uncharacterized protein
SequenceMQTASAPMAATQGHWGVSNAAGSQQQESPQGSPFGPPTHFAAQQNATNINPSAINSAVRPMLPLVTAPGAQYSVPPPQSQPSHGMPSSTHLARPISNEGARPGMTPPAPVSSGLSQAVSNNLGSPQPPSYQRHPSNVGMGSLQQPGPPWMQPAQHFQRPPYMHYSGNYAGPFQGQMRPMGPPSSGMLVGPASGFTPGFVMPGQGTQRPVMWSQLTPGAPVARSPVMTITDEMNRAPSGITGASAALPDKQSMLSGSTTSKGPSHVSADPADVWTAHKTDNGAVYYYNSVTAQSTYTRPEGFKGEPAKVTTQPTPVSWERLDSTDWALVTTDDGKKYYYNTKSQASCWEVPLEVAELRKKKEEVSRKPRIESVPTGISTADKSPVSFTLNVPAAITGGREAMGHKAAANSALDLIKKKLQDSGAQMTVSPTTAIAPGAGNAVNGVAPVDASVGKGMVVDVVKDKASKGDNASSDESSESEEEDLEPTKEQKVHEFKEMLKEKDVAPFSKWEKELPRIIFDPRFKAIPSHTERRSIFDHYVRTRADVERKEKRAAQKAAIKGFKDLLGEAAKDVTHTTTYDSFAKKWGQDTRFEALERKDRESLLIERVAPLRKAEEERVKAERASAVAGFRSLLSEKGEISSTSRWSKVKENLRSDPRYKLVERDEREDLFNAMVAELRAVEMEAERAAEAKKEEEDKLRDREREARKRKEREEQELERVRVKARRKDAATAYQALLTEKIKDPEMSWTEARSKLEKDALGRASNPDIDTTERERIFRVHIDGLYNRCVRDFRSLLSDLITPEAAAKHNEEGRTPLNSWHEAKKVLKSDPRYNKMPRRGRDSLWRKHVEDVQRRTKATNSINKDDTHFSPPRGRAVTPPRSHHRSRSPGRRARR
Length893
PositionUnknown
OrganismPhyscomitrella patens subsp. patens (Moss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Bryophyta> Bryophytina> Bryopsida> Funariidae> Funariales> Funariaceae> Physcomitrium.
Aromaticity0.06
Grand average of hydropathy-0.855
Instability index54.18
Isoelectric point9.49
Molecular weight98697.57
Publications
PubMed=18079367
PubMed=29237241

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17868
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     479.15|     106|     113|      18|     123|       1
---------------------------------------------------------------------------
   18-  103 (148.15/87.89)	............................................................................SNAA.GSQQQESPQGSPF.GP.PTHFAAQQNATNINPSAINSAVRPMLPLVTAPGAQYSVPPPQS.Q..PSHGMPSSTHLARPISNEGARPG
  104-  197 (130.98/76.69)	MTPPAPVS....SG........LSQA.VSNNLG................................spqppsyqrhpSNVGmGSLQQ..P.GPPWmQP.AQHF.................QRP..PYMHYSG.NYA.GPFQG.QmrP.MGPPSSGMLVGPAS..GFTPG
  214-  306 (120.67/69.97)	LTPGAPVA....RSpvmtitdeMNRA.PSGITG..........................................aS.AA.LPDKQSMLSGSTT.SKgPSHVSADPADVWTAHKTDNGAVY.YYNSVTAQ......................STY.TRPEGFKG.EPA
  309-  438 (79.36/43.02)	TTQPTPVSwerlDS........TDWAlVTTDDGkkyyyntksqascwevplevaelrkkkeevsrkpriesvptgiSTA......DKSPVSFTL.NV.PAAITGGREAMG.HKAAANSALDLIKKKLQDSGAQMTVSPTTAiA..PGAG...................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     432.21|      66|      66|     557|     622|       2
---------------------------------------------------------------------------
  491-  547 (61.95/33.88)	.VHEFKEMLKE........KD..VA..........PF..S.K.WEKelpriifDPRFKAIpSHTERRSIFDHYV.........RTRADVER
  557-  622 (108.30/64.84)	AIKGFKDLLGE......AAKD..VTHT....TTYDSF..AKK.WGQ.......DTRFEAL.ERKDRESLLIERVA.P.LRKAEEERVKAER
  625-  689 (94.57/55.67)	AVAGFRSLLSE......KG.E..ISST....SRWSKV..KEN.LRS.......DPRYKLV.ERDEREDLFNAMVA.E.LRAVEMEAERAAE
  690-  725 (49.22/25.38)	AKKEEEDKLRD......RERE.................................AR.....KRKEREEQELERV...........RVKARR
  728-  779 (51.55/26.94)	AATAYQALLTE......KIKDpeMSWT..............................EAR.SKLEKDAL..GRASnPdIDTTERERIFRVH
  787-  856 (66.63/37.01)	CVRDFRSLLSDlitpeaAAK.....HNeegrTPLNSWheAKKvLKS.......DPRYNKM.PRRGRDSLWRKHVE.D.VQR....RTKA..
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17868 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DVVKDKASKGDNASSDESSESEEEDLEPTKEQKVHEFKE
2) EMEAERAAEAKKEEEDKLRDREREARKRKEREEQELERVR
3) LITPEAAAKHNEEGRTPLNSWHEAKKVLKSDPRYNKMPRRGRDSLWRKHVEDVQRRTKATNSINKDDTHFSPPRGRAVTPPRSHHRSRSPGRRARR
4) MQTASAPMAATQGHWGVSNAAGSQQQESPQGSPFGPPTHFAAQQNATNINPSAINSAVRPMLPLVTAPGAQYSVPPPQSQPSHGMPSSTHLARPISNEGARPGMTPPAPVSSGLSQAVSNNLGSPQPPSYQRHPSNVGMGSLQQPGPPWMQPAQHFQR
5) PYMHYSGNYAGPFQGQMRPMGPPSSGMLVGPASGFTPGFVMPGQGTQRPVMWSQLTPGAPVARSPVMTITDEMNRAPSGITGASAALPDKQSMLSGSTTSKGPSHVSADPADVW
458
681
798
1
160
496
720
893
158
273










Molecular Recognition Features






MoRF SequenceStartStop




1) LPRIIFD
513
519