<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17862

Description Uncharacterized protein
SequenceMNCIDTHILEMQSMEGVEGDQQWGSFNNQATQKSEELEDEEDDEKTILQVALRSPPFSTALKMNFPELCRKFSAVAWCSKTNLICCAVETCSRDQGSTQEPAFWIPMHLVDPERPTEHSVFNVPADSPGDSIQHLEWSPNSCPRALLIVNASGRASIWSQPTQGGANVARTCNGWSCEYEWRQEQSITTKWLESPPPYRWTTSSTSTKGSFEEKYLPYQPRSTTRWPNFLCVCSVFWAGTVQLHWKQWPSSSPKWFATKKGVLGAGASGVFTGDAIINDSGSLLVAAAPVGNPSTVVVWEVTAWDLNTPSNTQQVSAKILIGNIQSPSWPGFSPLAAYLFTWQEQSTPETLLEGEDCPGPLLHCSVVSNFSAYVSPDAAATTSWGSGVTAVAFDPSRGGSALVTTVIEGYYISPGNPDAGPALTGWRIHRWESGTKPVNIHPLLESTNGPPPTMTTWTSVAKQNITRGRFSKNSHFQQKHCERERPVNPRAIARIVFSAHGGELAVALFSGEVHVFSGSTMTPVDLFHVKVDPHLPTPAFSPTSCCLASVWHDKKTDVCTLRIAQIPPVSSGAPPVLERHLADRFWWSLVSEVDWWDVVAATQAAAEDGHVTVAKVMSVLDADFHSLQPQQRHHYGPALDRIKCRVLEGVQAADVRVLVLDMQGRLMLDMLGRGIEAALMNPSTLIAEPWQASSDTLSGLGPDAMAVDGALVPTIQAYVDAVLDLASHFLTRLRRYASFCRTLTAHAASGTTSATTAARTAITSSSTTTSAAPASQGGAPAGAASSGGAAQVQAWVQGAIAKINSSSTNTDATTSAVSSTTVAGPATNLPLSVSTATFPGTPAVRLISDCHFLHRLCQLLLFCLIFRKRQLPRHVQISAGRPAASVDGTNKLGNIKEEPLIGQRTGLVKVEEGGHTVTRTTSTVSKGAEDIATSRAQRVGLGNCGQGYTPDEVKYLFLVLVDLCKRTAPLPHPLPKSQLQSANPILRLHFIDGQFTVAPEVVEASLGPHMQNLPRPRGADAAGLLMRELELHPPAEDWNRRMLAGGPVFAFLENEYEETENLDPSPIDFWPRKRRRVEHDAAFGLRTAVGLGSFTTLLGSRRDVITSQWKPPSHGVWHKCLRCGRQTSALTVPSKNTAQTSPPFATEMWNGRWPHGCPMCGGRWSRIV
Length1168
PositionTail
OrganismPhyscomitrella patens subsp. patens (Moss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Bryophyta> Bryophytina> Bryopsida> Funariidae> Funariales> Funariaceae> Physcomitrium.
Aromaticity0.08
Grand average of hydropathy-0.218
Instability index44.52
Isoelectric point6.58
Molecular weight126716.84
Publications
PubMed=18079367
PubMed=29237241

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17862
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     225.32|      51|     565|     537|     587|       1
---------------------------------------------------------------------------
  330-  374 (65.04/37.91)	.PGFSPLAAYLFT.WQEQSTPETLLEGEDCP......G.....PLLHCSVVSNFsaYV
  378-  431 (66.23/38.77)	AAATTSWGSGVTAVAFDPSRGGSALVTTVIEGyyISPGNPdagPALTGWRIHR...W.
  537-  587 (94.05/58.89)	TPAFSPTSCCLASVWHDKKTDVCTLRIAQIPP..VSSGAP...PVLERHLADRF..WW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     237.00|      63|     611|     163|     227|       2
---------------------------------------------------------------------------
  163-  227 (119.20/72.58)	QGGANVARTCNGWSCEYE.WrqEQSITTKWLES...PPP..YRWTTSS.TS..TKGSFEEKYLPYQPRSTTRWP
  444-  483 (26.01/ 7.89)	..............................LEStngPPPtmTTWTSVA.KQniTRGRF.SKNSHFQQKHCER..
  776-  839 (91.79/49.92)	QGGAPAGAASSGGAAQVQaW..VQGAIAKINSS...STN..TDATTSAvSS..TTVAGPATNLPLS.VSTATFP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     199.21|      59|     850|      91|     152|       3
---------------------------------------------------------------------------
   91-  152 (101.01/70.08)	CSrdQGSTQEPAFWIPMHLVDPER...PTEHSVFNVPADSpGDSIQHLEWSPNSCPRALLIVNAS
  944- 1005 (98.20/57.72)	CG..QGYTPDEVKYLFLVLVDLCKrtaPLPHPLPKSQLQS.ANPILRLHFIDGQFTVAPEVVEAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.83|      13|     121|     728|     740|       6
---------------------------------------------------------------------------
  728-  740 (26.45/18.08)	HFLTRLRRYASFC
  851-  863 (27.38/18.98)	HFLHRLCQLLLFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.36|      19|    1085|      51|      69|       8
---------------------------------------------------------------------------
   51-   69 (36.89/22.17)	ALRSPPFSTAL.KMNFPELC
 1138- 1157 (36.47/21.82)	AQTSPPFATEMwNGRWPHGC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17862 with Med16 domain of Kingdom Viridiplantae
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