<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17858

Description Uncharacterized protein
SequenceMAATQGYWEVWNTAASHRQGPPQRPPFGPPTHVAAQRNTFNLNPNASNSAARPIFAPPTTPGAQYGAHSSQLQPNHGMLLSSNLARPNSNEDSNAGMLPSTPVSSGLHQGIPNNIVSSQQPPQQPSYHGYSSNIGMGPLQQMGPPWMQSAQQFQRPSYMVYPGNYPGPLQAQMRPLGPSVNAMPVGPAPGLLTSGQVAQRPVIWTQEHPGPPAARSPIMTTTTTTDSTRSPIGSSRRSVALLDNQLNLSGSKTEKGPSQVAVDPADVWTAHKTDNGAVYYYNSVTAQSTYTRPDGFKGEPAKVTTHPTPVSWERLSPTDWALVTTDDGKKYYYNTKSQASCWEVPSEVAELRMNQEEVSGKLVFESVPTGISPVDKSPVSFTLNVSVSAGGRETTGHKPGADSALDLIKKKLQDAGAQVTVSPTTGTAPVAGNTLNGVSSVDASNGKGLGVDQTKDKPQKGDNKSSEESSDSEEEDPGATKEEKVNEFKEMLKEKGVAPFSKWEKELPKIIFDPRFKAIPSHTERRSIFEHYVRTRADVERREKRAAQKAAIEGFKQLLEEAAKDISHTTTYDSFVRKWGHDTRFEALERKHRESLLNDRVAPLRKAEEERVRAERVAAVAGFRALVSEKGDINSTSRWSKVKENLRSDPRYKLVEREEREVLFNGIISELKAAEIEVERAAKAKKEEEKSKEKERDARKRKEREEQELERVRVKSRRKDAASAYQALLTEKIKDPETSWTEARTQLEKNLLGRASNSNIDATERERIFRVHIDGLYSRCVRDFRSLLSDLITPEAAAKHDEEGRTPLDSWHEAKKVLKLDPRYSKMPRRERESLWRKHVDDLQRRTKTTNPTSRDDNHFSTRRRASTPPRSHQRSRSLGRRFRR
Length885
PositionUnknown
OrganismPhyscomitrella patens subsp. patens (Moss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Bryophyta> Bryophytina> Bryopsida> Funariidae> Funariales> Funariaceae> Physcomitrium.
Aromaticity0.06
Grand average of hydropathy-0.919
Instability index53.68
Isoelectric point9.50
Molecular weight98773.04
Publications
PubMed=18079367
PubMed=29237241

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17858
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     266.44|      46|      49|     273|     318|       1
---------------------------------------------------------------------------
  114-  146 (30.41/13.66)	.........NIVS.....SQQPPQQP...S........YHGYSSNIGMGPLqqmgP.P....W......
  149-  175 (32.48/15.17)	............S.....AQQ.FQRP...S........YMVYPG...NYPG....PLQ.....AQMRP.
  178-  210 (41.59/21.78)	.........PSVN.....AMPVGPAP..............GLLTSGQVAQR....PVI....WTQEHPG
  274-  318 (76.87/47.38)	.DNGAVYYYNSVT.....AQSTYTRP..DG........FKGEPAKVTTHPT....PVS....WERLSPT
  325-  369 (53.94/30.74)	TDDGKKYYYNTKS.....QASCWEVP..............SEVAELRMNQE....EVSgklvFESV.PT
  374-  435 (31.15/14.20)	VDKSPVSFTLNVSvsaggRETTGHKPgaDSaldlikkkLQDAGAQVTVSPTtgtaPVA....GNTL...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     446.36|      64|      65|     545|     608|       2
---------------------------------------------------------------------------
  479-  540 (77.22/41.18)	.ATKEEKVNEFKEMLKE..K.GVAPFSKWEKE..LPK.IIFDPRFKAIpSHT.............ERRSIFEHYVRTR..ADVE
  545-  608 (101.62/56.40)	RAAQKAAIEGFKQLLEEAAK.DISHTTTYDSF..VRK.WGHDTRFEAL.ERK.............HRESLLNDRVAPL..RKAE
  613-  675 (90.65/49.56)	RAERVAAVAGFRALVSEKG..DINSTSRWSKV..KEN.LRSDPRYKLV.ERE.............EREVLFNGIISEL..KAAE
  680-  713 (46.56/22.05)	RAA.KAKKEEEK...........SKEKERD................AR.KRK.............EREE......QEL..ERVR
  715-  782 (64.41/33.18)	KSRRKDAASAYQALLTEKIK.D.PETS...........WT.EARTQ.L.EKNllgrasnsnidatERERIFRVHIDGLysRCVR
  785-  845 (65.91/34.12)	RSLLSDLITP.....EAAAKhDEEGRTPLDSWheAKKvLKLDPRYSKM.PRR.............ERESLWRKHVDDL..QR..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.45|      22|      27|      24|      45|       3
---------------------------------------------------------------------------
   24-   45 (45.25/23.40)	RPPFGPPTHVAAQ..RNTFNLNPN
   52-   75 (39.20/19.34)	RPIFAPPTTPGAQygAHSSQLQPN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17858 with Med35 domain of Kingdom Viridiplantae
Unable to open file!