<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17855

Description Uncharacterized protein
SequenceMGVHEDFMMQSGYFSMEKYGAMQQPSPTPSTPSTGFMGPRSSPLFSNAVDQPEPPPPTGQDVDRPNSMSSGQDSDQAPPRHLANALDGLGRAVRHIADVRSGADLLLEALDAAAQVRSHGAGNKKPSDRIQKAADAMRIALDALRATGKELEAAGVLNGAQQRFEENGLWNSPVPFVAPDGWLVPYAWKRQIAGQAAATAYERARLALKAFTEQKRRFFPGLAATTTSVTGTKRPRSEGSETTDTAEPSLPDLLRRIQPETQGMVVTPYERLAWVKKSNLKAGMSTTFASRVLTSNSSLSVRHGNAGTPQQPPQAGVDNPTSSTRQAEKIAVLEASIPSVLVAVVSVIPAGSLYPDAVALFSPAEAGGHIQAWGVSQHKLYQRLSEHVTATLHQLLQQDRTSALELLLRWLLSYRTLFTQQCSVCKHVMAYDGPSDLIFPPLVRPTPRATVPLTTKNAKTEESNADNEALAYHLGCVPKGME
Length482
PositionTail
OrganismPhyscomitrella patens subsp. patens (Moss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Bryophyta> Bryophytina> Bryopsida> Funariidae> Funariales> Funariaceae> Physcomitrium.
Aromaticity0.06
Grand average of hydropathy-0.379
Instability index50.41
Isoelectric point8.32
Molecular weight51974.11
Publications
PubMed=18079367
PubMed=29237241

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17855
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.92|      21|      21|      84|     104|       1
---------------------------------------------------------------------------
   59-   73 (18.96/ 8.48)	......GQDVDRPNSMSSGQD
   84-  104 (34.29/21.08)	NALDGLGRAVRHIADVRSGAD
  108-  128 (32.67/19.75)	EALDAAAQVRSHGAGNKKPSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.02|      31|     193|      25|      57|       2
---------------------------------------------------------------------------
   25-   57 (58.50/37.23)	PSPTPSTPS.TGFMGPRSSPlfSNAVDQPEPPPP
  220-  251 (51.52/26.82)	PGLAATTTSvTGTKRPRSEG..SETTDTAEPSLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17855 with Med27 domain of Kingdom Viridiplantae
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