<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17853

Description Uncharacterized protein
SequenceMQSSWKAVLEVTKTALAQNDPPLVWGADVATCIHEQGTGLPSVELSPILLRCLLRGASNGPNFATMWSYIQHALSCHMVSALHMIALLTSRIIPTRQQQPEMYKVYLDLTGTYVFSFSSTKLMPCRDRVVKAVDESLQLSKSPEAPITEVGVVIVHFLFTLVARLAEAVYEDWKSNKGVMHGQMMHPGHEEKGEMGIEQLKRTNSLAAVHLMARIMHNKRTAGILRIARRNLQDQWALFVQRLQMVESLTNDPSSMAPKETVEALGLLANAIQQGLRPEWRPSQLPVIRSLLPTHSRSWSFGNAGGLGQSSLWLPFDIYMEAAMEGRRLSTSSNSEILADAMKAMQSVHAANWVDLFLGLWTAALRLVKRDRESFEGPNPHVESRLCMLLSILPIASGIVIEEEEKGQLHPENISGDDKERKVVGGRRAALETCLKVLGQFESLLIPPAVAVTAANQVAAKVAAFLSSGVQNLAADVSNSGKSAVGNMRHLIVDACIARGLMDKTAYFWLGSGGSLTNVPASPSQPSPWSAFMEGAPLTGSLRAALMSSPAGSVAELEKVYKTAILGPEEERAAAASILCGASLVRSWTVQELAVHFAVQLLSPPVGDNWGGNSGNALIGHAPMLYAALQGMNNADALNVLSLFGMFPEMAASLLPICEVFGSITNAKPVATSNGEELSAHMVFTVAFLQLVKLWKFHRPPLEHCLLGSGAGLGADLSLEYLLQLRNMQLASPAKQRMQVLGSTYTSPPNSAVITLDSFPRLRIWYMQHQACISSTVTGLVRNNPVHSVGDRLLAMMFKKVNKSSSAPSTPNEDVAGRPVLCAWDIIAAAPIVLEYALTACSHGTLPPRDLTTGLRDLVDYLPATIATIVSYCSAECTRGLWKYASMNGQDWPSPAANLLSIQGEVKDILAAAGVHTSSPSGTGGGNAPVSIPLPLAALIGLTITFKLDKFGDTVLSVAGPALESCSGAGPWFSMQVVAALWAQKVKRWHDYIVFAGSCHIFKQSKPALLQLLKSCFAVTLSTSGALGSKLQSHGGVGALLGHAACSPYAPGILYLRSYSTLHDIMFLSDETLVLVAEAVGELGGHVTEGELLGHANRLRCVQGSMSTSMSRVIQASSLGASLLYVSGGTTLVTKLFTESIPTWFLANSGSKGSQAPGGLILEGYAIAHFALLSGALAWGVSGSNAGLSVDSGVPVLMRRHHVLGSHMEFLASGLGGDLAVSCEQTLWRSYVVGFLALMVTCTPTWILELKIETLRKLATGLRFWHEHDLAVALLERGGPSAMGAAAELTLG
Length1292
PositionTail
OrganismPhyscomitrella patens subsp. patens (Moss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Bryophyta> Bryophytina> Bryopsida> Funariidae> Funariales> Funariaceae> Physcomitrium.
Aromaticity0.07
Grand average of hydropathy0.184
Instability index47.51
Isoelectric point7.08
Molecular weight138217.23
Publications
PubMed=18079367
PubMed=29237241

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17853
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     229.30|      50|     185|    1015|    1073|       1
---------------------------------------------------------------------------
  597-  626 (50.52/16.72)	FAVQL.LSPPVGDNWG...GN......SG.NALIGHA.........................PMLY............
 1017- 1067 (86.16/51.37)	FAVTLsTSGALGSKLQ...SH......GGVGALLGHAA..................CSPYAPGILYLRSYSTLHDIMF
 1079- 1137 (48.77/15.55)	.........AVG.ELG...GH......VTEGELLGHANrlrcvqgsmstsmsrviqASSLGASLLYVSGGTTLVTKLF
 1170- 1227 (43.86/13.09)	FA..L.LSGALA..WGvsgSNaglsvdSGVPVLMRRHH.........vlgshmeflASGLGGD.LAVSCEQTL.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     247.44|      50|     181|     535|     594|       2
---------------------------------------------------------------------------
  535-  584 (77.12/36.41)	GAPLT....GSLRAALMSSPAGSVAEL..EKVYKT..AILGPEEERAAAASILCGASL
  669-  713 (59.07/27.46)	..PVA....TSNGEELSAHMVFTVAFL..QLVKLW..KFHRPPLEHCLLGS...GAGL
  714-  759 (51.84/20.31)	GADLSleylLQLRNMQLASPAKQ..........RM..QVLGSTYTSPPNSAVITLDSF
  774-  826 (59.41/39.14)	SSTVT....GLVRNNPVHSVGDRLLAMmfKKVNKSssAPSTPNED.VAGRPVLCAWDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.89|      39|     307|     143|     181|       4
---------------------------------------------------------------------------
  143-  181 (68.19/36.04)	PEAPIT...EVGVVIVHFLFTLVARLAEAVYEDWKSNKGVMH
  448-  489 (57.70/29.55)	PAVAVTaanQVAAKVAAFLSSGVQNLAADVSNSGKSAVGNMR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.90|      19|     404|     511|     533|       5
---------------------------------------------------------------------------
  511-  533 (29.44/23.56)	GSGGSltNVPAspSQPSPWSAFM
  922-  940 (35.45/16.26)	GTGGG..NAPV..SIPLPLAALI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.04|      10|     920|      67|      78|      10
---------------------------------------------------------------------------
   69-   78 (21.95/18.42)	YIQHALSCHM
  992- 1001 (21.10/ 7.88)	YIVFAGSCHI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17853 with Med33 domain of Kingdom Viridiplantae
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