<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17850

Description Uncharacterized protein
SequenceMAAPGGQVQAAVAAAPGQAAQRTDMAPVLQQLNLASLRTRTQDLHNAISRILHSFHTLPALKWSEVLGQFAMVNVELLNLVEDIKPILKAFVVYPKNVNAENATILPIMLSSKLLPEMESEEAVLKDKLLAGMSNLPVQMQTEKIQRQIELVRSVCDGAEKVLGEARKVYGLSSRQGPVALATVDKNHAARIAEQENLLRAASNSGDGLRISPDQQQAPAMLPPHLSSALGTSAIDTGSSFPRGSSSALPPSGLLRPAAPQQQINSSQVLPRSNIGVSMQALGGAVSLPGGTAATTIPYVNSPRSSTANFNVPSPQQLQNQQQQQAIIRQQRIQQLQKQQQQALQAQQGQQLRRPGTPPIPQTQTTLQPQGQHSLQLQQAKLQQQNQLQQQLQQQQQQQQQHYQAQQLQAQQQQQQQQSLQQQHALQHQLQTTQLHAAQQNTLAQGNQGRSQLNQLGMNNMYGNNQSSLLPPAMSGQSQAFLQQRYALPGNASQLYNMGNSMGNTLGGNLGNPLGSGMGNPLGNNLANAMGNTLGNSMGGSLGNSIGNMGMAGTVAQGTSTLALPLQQQLAGQANYSGLLNANQMNAFGQQRQQPPQ
Length597
PositionHead
OrganismPhyscomitrella patens subsp. patens (Moss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Bryophyta> Bryophytina> Bryopsida> Funariidae> Funariales> Funariaceae> Physcomitrium.
Aromaticity0.03
Grand average of hydropathy-0.515
Instability index65.16
Isoelectric point9.95
Molecular weight64015.34
Publications
PubMed=18079367
PubMed=29237241

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17850
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.53|      15|      15|     392|     406|       1
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  333-  347 (26.49/ 6.47)	IQ.QLQKQQQQALQAQ
  392-  406 (33.06/10.09)	LQ.QQQQQQQQHYQAQ
  408-  423 (25.97/ 6.19)	LQaQQQQQQQQSLQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     135.74|      19|      19|     502|     520|       2
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  462-  479 (23.63/ 8.06)	YGNNQSS.L.LPPAMSGQSQ
  484-  500 (25.63/ 9.53)	QRYALPGN..ASQL.YNMGN
  502-  520 (40.08/20.17)	MGNTLGGNL.GNPLGSGMGN
  522-  536 (24.99/ 9.06)	LGN....NL.ANAMGNTLGN
  562-  581 (21.41/ 6.42)	LALPLQQQLaGQANYSGLLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.58|      20|      20|     227|     246|       3
---------------------------------------------------------------------------
  227-  246 (35.19/21.48)	SSALGTSA....IDTGSSFPR...GSS
  252-  278 (22.08/10.69)	SGLLRPAApqqqINSSQVLPRsniGVS
  287-  306 (23.31/11.70)	SLPGGTAA..ttIPYVNS.PR...SS.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.90|      19|      57|     372|     390|       6
---------------------------------------------------------------------------
  372-  390 (34.50/10.76)	QHSLQLQQAKLQQQNQLQQ
  427-  445 (33.40/10.20)	QHQLQTTQLHAAQQNTLAQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17850 with Med8 domain of Kingdom Viridiplantae
Unable to open file!