<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17848

Description Uncharacterized protein
SequenceMAQQQQQAGPPGAGRGRGMTLPAWMTGGPPSPGMPPGGGPPQGHLQTNPGAVGAMPPRMMGMGPSAPTSTFQSAPQMPLGMPPNMQGMNPQQPQQFSTRPPAQQSQGQPSSQSSGMPFGAQPRPISSTPLPPQAQQLQQQPSSQQQQQQPVPPPSGPGNHALQPASSYPQFSSTSSFSQPAVSYGLAPPYQVPTQMQIQQPQPGSQPWSGVGGQTSSHSASLQSVQPPPSSGLSIAVPSPGAADWQEHVAPDGRRYYYNRRTKQSSWEKPTELMTPIERADASTPWKEFTTADGRKYYYNKVTKQSKWTMPDEMKLAREQVEKSVGPVSQAAVLTPPTSVKQPASAALPLPQTTISNVAANSLTSVLPGATTANAKLQVAGDAKKDLKEEVMNGTSAQDFEEAKKVMLVTSKINISPVLEEKPSLVSEEPQTYASKTEAKNAFKELLESVHVEADWTWEQAMRVIINDKRYGALKTLGERKQAFNEYLAHRKKQESEEKRAKQKIAREQFRAMLEESKDLTSSMRWSKAFSIFEDDPRFLAVERDREREELYEDYMVDLERKEREKAREERKKYIAEYRSYLENCGFIKATTQWRKVQDRLEDDERCSRLDKLDRLEVFQEYIRDLEKEEDEAKRLQKDQLRRKERKHRDEFRKLMDEHKAAGILTAKTVWRDYLTKVKDNSAYQAVASNTSGTTPKELFEDVVEELVKQYHDDKARVKDVMKAGKISVGGTWTFDKFKAAYAEAGDLAAIAVPNLKLVFEDYVERAKEKEEKEAKKRRRMADDFTNLLRSTKAVTLSSKWEDVRPLIEDSQEYRALPDDGQRKKLFEDYVIHLVRKAKEKDKKREKEEKVKKEKEKEKEKEKEKEKDKDKDKDREKRKEKEKEKEKEKEKEKEKSSHEKISLHVDEMEGVTNHSSHKDERRKDKDRDKDKEREKKHRKRHRSVSSEEIATDKDRDEKDSSRKSRRHGSDHKKSSRKVDMFDS
Length983
PositionUnknown
OrganismPhyscomitrella patens subsp. patens (Moss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Bryophyta> Bryophytina> Bryopsida> Funariidae> Funariales> Funariaceae> Physcomitrium.
Aromaticity0.06
Grand average of hydropathy-1.169
Instability index56.63
Isoelectric point9.18
Molecular weight111912.37
Publications
PubMed=18079367
PubMed=29237241

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17848
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     149.72|      25|      25|     845|     869|       1
---------------------------------------------------------------------------
  642-  661 (21.75/ 6.16)	RRK......ERKHRDEFRKLMDEHKA.....
  848-  869 (27.39/ 9.55)	.........EEKVKKEKEKEKEKEKEKEKDK
  871-  895 (38.38/16.15)	KDK......DREKRKEKEKEKEKEKEKEKEK
  898-  927 (26.26/ 8.87)	HEKislhvdEMEGVTNHSSHKD.ERRKDKDR
  931-  955 (35.94/14.68)	KER......EKKHRKRHRSVSSEEIATDKDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     247.95|      37|      38|     237|     273|       2
---------------------------------------------------------------------------
   70-  108 (41.02/16.24)	.TFQSAPQMPL...G.M...............ppnMQG.......mNPQQ...PQQFSTR..PPAQQ.SQGQ
  109-  145 (45.94/19.07)	PSSQSS.GMP...fG.A..................QPR........PISStplPPQAQ....QLQQQPSSQQ
  171-  219 (32.38/11.26)	FSSTSSFSQPAvsyG.L.............appyqVPTqmqiqqpqPGSQ...PW....S..GVGGQTSSHS
  220-  260 (50.30/21.59)	ASLQSVQPPPS...SgL...............siaVPS........PGAA...DWQEHVA..PDGRRYYYNR
  261-  301 (45.79/18.99)	RTKQSSWEKPT...E.L...............mtpIER........ADAS..tPWKEFTT..ADGRKYYYNK
  302-  357 (32.52/11.34)	VTKQSKWTMPD...E.MklareqveksvgpvsqaaVLT........PPTS...VKQPASAalPLPQTTISN.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.54|      17|      23|      25|      41|       3
---------------------------------------------------------------------------
    9-   22 (23.05/ 7.53)	...GPPGAG.RGR...GMTL..P
   25-   41 (39.52/17.51)	MTGGPPSPG.MPP...GGGP..P
   45-   67 (21.97/ 6.88)	LQTNPGAVGaMPPrmmGMGPsaP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     106.01|      25|      25|     543|     567|       4
---------------------------------------------------------------------------
  479-  507 (19.09/ 8.00)	..ERKQAFNEYLAHRKKQESEEKrakqkiAR
  545-  569 (31.40/18.28)	DREREELYEDYMVDLERKEREKA.....rE.
  570-  592 (27.60/15.11)	..ERKKYIAEYRSYLENCGFIKA......TT
  820-  841 (27.91/15.36)	DGQRKKLFEDYVIHLVRKAKEK.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     111.71|      22|     140|     618|     639|       5
---------------------------------------------------------------------------
  618-  639 (38.74/19.83)	VFQEYI.RDLEKEEDEA..............K...RLQKD
  670-  702 (20.38/ 7.23)	VWRDY....LTKVKDNSayqavasntsgttpK...ELFED
  703-  720 (26.11/11.16)	VVEELV.KQYH...DDK..............A...RV.KD
  759-  784 (26.48/11.42)	VFEDYVeRAKEKEEKEA..............KkrrRMADD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     149.81|      33|      65|     443|     475|       6
---------------------------------------------------------------------------
  443-  475 (55.92/35.09)	FKELL.ES.VHVEADWTWEQAMRVIINDKRYGALK
  510-  543 (50.45/30.95)	FRAMLeES.KDLTSSMRWSKAFSIFEDDPRFLAVE
  785-  817 (43.44/25.63)	FTNLL.RStKAVTLSSKWEDVRPLIEDSQEYRAL.
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17848 with Med35 domain of Kingdom Viridiplantae
Unable to open file!