<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17845

Description Uncharacterized protein
SequenceMAQQQVGPPGAGRGRGMTLPAWMTGGPPSPGMPPGAGPPQSHLQTNPGAVGAMPPRMMGMGPSGPSPNFQSAPQMQQGQQFMGPGGQQYRPGVGMGPPQQLGMPPNMQGMNPQQPQQFPARPPPQQPQGQPSSQGSGMPFGVQQRPMTSTLQPPQAQQQQPSSHQQQQQQSVPLPPVPGNHTLQPASSYPFSSASSFSQPPVSYGLAPPYQVPTQLQNQQLQPVSQPWSGVGGQTNAQSVSLQPVQPPLVSGISIAAASSGAADWQEHVAPDGRRYYYNRRTKQSSWEKPTELMTPTERADASTPWKEFTTADGRKYYYNKVTKQSKWTMPDEMKLAREQAEKAAGLPVSQPAVLTSSTSLKQPASTGVHSSQTTNSTGAATSSTPTLMGAATTANSKLQVVSDVKKELEEEVADGTSAQELEEAKKVMVVTSKVNISPVPEEKPTLVSEEPQTYASKTEAKNAFKELLESVHIEADCTWEQAMRVIINDKRYGALKTLGERKQAFNEYLAHRKKQESEEKRVKQKVAREQFLTMLEECKDLTSSMRWSKALSMFEDDPRFLAVEKDREREELFEDYMIDLERKEREKAREERKKHISEYRSFLESCDFIKANTQWRKVQDRLEDDERCSRLDKLDRLEVFQEYIRELEKEEEEEKRKQKEQLRRKERKHRDEFRKLMDEHKAAGILTAKTAWRDYLMKVKDNSAYQAVASNTSGTTPKELFEDVIEELVKQYHEDKARAKDVMKAGKISVGATWTFDKFKAAYAEAGDLAAIAEPNLKLVFEDYVERAKEKEEKEAKKRRRMADDFTNLLRSTKAVTSSSKWEDVKLLIEVSQEYRALSDDGHRKKLFEEYVLHLAHKAKEKEKKRAPKKRSRRRRRRRKTRIRRKIRIRTRTRTRRKTRTKIRIERGEKRKRKRRIRKRRSLDMKSPSYMSMKWKE
Length938
PositionUnknown
OrganismPhyscomitrella patens subsp. patens (Moss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Bryophyta> Bryophytina> Bryopsida> Funariidae> Funariales> Funariaceae> Physcomitrium.
Aromaticity0.06
Grand average of hydropathy-1.035
Instability index69.21
Isoelectric point9.73
Molecular weight106744.75
Publications
PubMed=18079367
PubMed=29237241

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17845
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     171.58|      40|      40|     262|     301|       1
---------------------------------------------------------------------------
  262-  301 (78.12/52.89)	AA.DWQEHVAPDGRRYYYNRRTKQSSWEKPTELMTPTERAD
  302-  342 (71.46/47.66)	AStPWKEFTTADGRKYYYNKVTKQSKWTMPDEMKLAREQAE
  509-  531 (22.00/ 8.82)	................YLAHRKKQESEEKRVKQKVAREQ..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     329.13|      47|      48|      31|      77|       2
---------------------------------------------------------------------------
    8-   31 (35.43/11.35)	.................PPGA..G..............R..GRGMTLP.AWMTG.GP..PSPG.....
   32-   72 (78.49/33.99)	...............M.PPGA..GPPQ...SHLQ..TNP..GAVGAMP.PRMMGMGPSGPSPNFQS.A
   73-  111 (61.68/25.15)	PQMQQ......GqqfM.GPGG..Q.........Q..YRP..G.VGMGP.PQQLGM....P.PNMQGmN
  112-  140 (49.81/18.92)	P..QQ......P...Q.QFPA..RPPP...QQPQ..GQP..SSQGSGM.P.............F....
  141-  194 (58.08/23.27)	.GVQQrpmtstL...Q.PPQAqqQQPS...SHQQ..QQQ..QSVPLPPvPGNHTLQPASSYP.FSS.A
  200-  248 (45.64/16.72)	PPVSY......G...LaPPYQ..VPTQlqnQQLQpvSQPwsGVGGQTN.AQSVSLQPVQP.P......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.25|      15|      73|     788|     802|       3
---------------------------------------------------------------------------
  646-  660 (21.89/ 9.14)	RELEKEEEEEKRKQK
  788-  802 (24.96/11.48)	RAKEKEEKEAKKRRR
  901-  915 (24.40/11.05)	RTKIRIERGEKRKRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     326.00|      47|      65|     532|     578|       4
---------------------------------------------------------------------------
  422-  467 (26.78/11.65)	....LEEAKK...VmvvTSKVNIS...PVPEEKPTLVSEEPQtyaskTEAKNAFKE..
  469-  508 (46.88/26.09)	....LESVH....I...EADCTWEQAMRVIINDKRYGALKTL.....GERKQAFNE..
  532-  578 (78.49/48.82)	FLTMLEECKD...L...TSSMRWSKALSMFEDDPRFLAVEKD.....REREELFEDYM
  604-  645 (56.02/32.67)	....LESCDF...I...KANTQWRKVQDRLEDDERCSRLDK......LDRLEVFQEYI
  674-  726 (55.19/32.07)	FRKLMDEHKAagiL...TAKTAWRDYLMKVKDNSAYQAVASN..tsgTTPKELFEDVI
  807-  852 (62.63/37.42)	FTNLLRSTKA...V...TSSSKWEDVKLLIEVSQEYRALSDD.....GHRKKLFEEY.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.91|      15|      19|     865|     882|       5
---------------------------------------------------------------------------
  865-  882 (21.54/20.33)	KKRApkkRSR.RRRRRRKT
  885-  900 (22.36/11.43)	RRKI...RIRtRTRTRRKT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.84|      12|      80|     580|     592|       6
---------------------------------------------------------------------------
  580-  592 (16.97/12.32)	DLERKEReKAREE
  662-  673 (22.87/12.21)	QLRRKER.KHRDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.75|      19|      19|     346|     364|       7
---------------------------------------------------------------------------
  343-  361 (29.60/21.79)	KAA...GLPVSQPAVLTSSTSL
  362-  380 (20.82/12.64)	KQPastGVHSSQT...TNSTGA
  381-  399 (26.33/18.39)	ATS...STPTLMGAATTANSKL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17845 with Med35 domain of Kingdom Viridiplantae
Unable to open file!