<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17839

Description Uncharacterized protein
SequenceMMSQRQLVVAVEATGALGPFWSVLLTEYVDKIVRAFFDESNNQKNGSSPGEVALVVFNTHGSHSDFLLRQSGWTSSMDLFFKWLSALTFEGGGFSEAAVAEALAEALMMCCPGPKPPTVPHQKHCLLIAASNPYRLPTPVMRPPVILLSTGQAELQSEQWWLADAETVAKAFPPCQVSLSVIAPRQLPLLRSIYNGAKRNPRAADTGPDFSKLHLVLISEGFPEGKLALRRASGASNTAVSSSLSAKLEPLLATTTSAPSQPAVRPMPPSTAVGAMMGRQAVSNGSSGVTMENQSLSHNTVAAVPLPSQHPSSSGVSGTDTMQTSVQTSDTSASSQAKVGPVGGNPSTLGHVGTLTQPHKMPGGAVANGGPAVPSGASSNPTAPSSLTSGPATIIPGNGNVLTTIGSATTVGMNTGIGHSSIGTLSANANTIASSNLVGPTGSLVPNQLGPSTVSPLQQGVGQLPVSGAGQPQAKPLGAIAGMGVTTTALGTAGVNAGVNSMPPSSGFVQPVQPVQPLAPGIHGVTQTAQSATPPQQPSGSMKYTKLWEGILAGQRQQKPVPICKLEGYRQTSSSEKLAADWPPTMQIVRLIAQEYMNSKEYQGKAELLVFRPLSSHGFLVQLAEKKLCAVIQLPSQTLLLASTDKPGRMIGMLFPGDMVVFKPNVAPSSQQPTGAVPPMAGTGQAMGQTLGQSNFSQGQLQAQMHPQQLNAAQQMTAQQLNAQQMGPQQLNSQQLNAAQQMNTQQQMNAQQMGVQQMNPQQLNAAQQMNTQQQLNAQQMGVQQMNPQQLNAAQQMNTQQQLSAQQMGMQQMNPQQLNAAQQMSTQQMNPQQMSAQQMNPQQMNVQQINPQQMNVQHMNTQQMSPQQARPQIMPGPASLQGSGYLP
Length886
PositionUnknown
OrganismPhyscomitrella patens subsp. patens (Moss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Bryophyta> Bryophytina> Bryopsida> Funariidae> Funariales> Funariaceae> Physcomitrium.
Aromaticity0.04
Grand average of hydropathy-0.287
Instability index47.54
Isoelectric point9.19
Molecular weight93077.72
Publications
PubMed=18079367
PubMed=29237241

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats
>MDP17839
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     314.47|      24|      24|     751|     774|       1
---------------------------------------------------------------------------
  704-  720 (34.39/ 9.36)	......QMHPQQLNAAQQM.TAQQ
  724-  747 (55.26/18.60)	QQMGPQQLNSQQLNAAQQMNTQQQ
  751-  774 (59.87/20.64)	QQMGVQQMNPQQLNAAQQMNTQQQ
  778-  801 (59.87/20.64)	QQMGVQQMNPQQLNAAQQMNTQQQ
  805-  827 (56.47/19.14)	QQMGMQQMNPQQLNAAQQMST.QQ
  831-  852 (48.61/15.66)	QQMSAQQMNPQQMNV.QQIN.PQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     339.02|      47|      48|     350|     396|       2
---------------------------------------------------------------------------
  214-  259 (33.53/ 8.59)	.HLVLI.....SE..GFPEGKLAL........RR...ASGA.SN...TAV...SSSLSA.KlePllA....TTTsaP
  260-  305 (57.85/20.30)	SQPAVR.....PMPPSTAVGAMM.........GRQAVSNGSSGV...TME...NQSLSH.N..T..V....AAV..P
  307-  346 (42.21/12.77)	.............PSQHPSSSGVS........GTDTMQTSVQTS...DTS...ASSQAKvG..P..V....GGN..P
  350-  396 (86.15/33.91)	GHVGTL.....TQPHKMPGGAVAN........GGPAVPSGASSN...PTA...PSSLTS.G..P..A....TII..P
  397-  418 (30.61/ 7.19)	G......................N........GN..VLT.........TI...GSATTV.G..M..N....TGI..G
  420-  456 (38.70/11.08)	SSIGTL.............SANAN...........TI...ASSNlvgPTGslvPNQL...G..P..S....TVS..P
  460-  520 (49.97/16.50)	G.VGQLpvsgaGQPQAKPLGAIAGmgvtttalGTAGVNAGVNSM...P.....PSSGFV.Q..P..VqpvqPLA..P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.61|      16|      26|     643|     658|       3
---------------------------------------------------------------------------
  556-  571 (24.16/ 7.67)	RQQKP.VPICKLEGYRQ
  643-  658 (26.16/ 8.85)	STDKP.GRMIGMLFPGD
  669-  685 (27.29/ 9.51)	SSQQPtGAVPPMAGTGQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17839 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FKPNVAPSSQQPTGAVPPMAGTGQAMGQTLGQSNFSQGQLQAQMHPQQLNAAQQMTAQQLNAQQMGPQQLNSQQLNAAQQMNTQQQMNAQQMGVQQMNPQQLNAAQQMNTQQQLNAQQMGVQQMNPQQLNAAQQMNTQQQLSAQQMGMQQMNPQQLNAAQQMSTQQMNPQQMSAQQMNPQQMNVQQINPQQMNVQHMNTQQMSPQQARPQIMPGPASLQGSGYLP
2) LEPLLATTTSAPSQPAVRPMPPSTAVGAMMGRQAVSNGSSGVTMENQSLSHNTVAAVPLPSQHPSSSGVSGTDTMQTSVQTSDTSASSQAKVGPVGGNPSTLGHVGTLTQPHKMPGGAVANGGPAVPSGASSNPTAPSSLTSGPATIIPGNGNV
3) SNLVGPTGSLVPNQLGPSTVSPLQQGVGQLPVSGAGQPQAKPLGAIAG
662
248
435
886
401
482










Molecular Recognition Features






MoRF SequenceStartStop




NANANA