<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17838

Description Uncharacterized protein
SequenceMSQRQLVVAVEATGALGPFWSVLLTEYVDKIKNGSSPGEVALVVFKTHGSHSDFLLWQSGWTSSMDLFFKWLSALTFEGGGFSEAAVAEALAEALMMCCPGPKPPTVPQHKHCLLIAASNPHPIPTPVMRPPVILLPTGQAELQSDKWWLADAETVAKAFPPAKRNPRAADTGPDFSKQHLVLISEGFSEGKLAFCPAAAASKYCCVV
Length208
PositionUnknown
OrganismPhyscomitrella patens subsp. patens (Moss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Bryophyta> Bryophytina> Bryopsida> Funariidae> Funariales> Funariaceae> Physcomitrium.
Aromaticity0.09
Grand average of hydropathy0.120
Instability index38.93
Isoelectric point6.29
Molecular weight22317.57
Publications
PubMed=18079367
PubMed=29237241

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17838
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.53|      19|     104|      81|      99|       1
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   81-   99 (35.17/24.14)	GFSEAAVA.EALAEALMMCC
  187-  206 (33.36/22.53)	GFSEGKLAfCPAAAASKYCC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17838 with Med25 domain of Kingdom Viridiplantae
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