<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17834

Description Uncharacterized protein
SequenceMEESSGGVSMNMNSIRIAVQNLFNLYLGRSLLEKADGNRGENLSLAVRKRVAAVSRPQAPKEDQFSSDFLMLQSQFTDQEQGRLVTETVLATLLVQCCSHGVQSDFLLSCLQILVKMGFVRWDSFLHILLRAAEKAENIGQATGSHQGMNVGVTGPQLTGPLAMMMQGTTATPASTPASPSPSSNLLTSSAHGNVAASPAHSGVEYSSVNPSSNGGTGASGTSIINSLRPLVCRVMLAALDNELKPVTCLDILLHVAQWIQTWDAEVDGKEDESKSRLNSWKLKSKMWIHSCVEVIWALIDENKCRVPFYALLHDKTQLQVERWPDDEALFALFLEVHRRRDKIALHMLPLDQHLHCPTFATLRVSSLTYPGTMGELLHGEDVATAIPKGSVEWEKAMRCLRQALRACVSTDWWKKVLVLAPRFKKAPQSMGPRTGSLFVGQPSLEFSADMTCDAVVERIMELMQPLPTGSTNSTVTEAGRWQEWLMFADLFYFFMSTSCLDFLELIDKLSLRFANGTVMASNHVTWLLAQVFRLEIVTSALSSESQVETARKILSFNMAERSVEQTSNTTAQALLLDFVGSSQTLRLWSINRNMMENLHGNRVQEHMQKGKVIDEWWKQVMKGEWVLDYAQLDEKAMGMVWVLSNTMTQPISEALMIWFRSSGLSEIILQGERLSVIHETRPLPMTLLSGLSLHLCLRLLTQIEELIFAGQFIPSIAMVETYVRLLLAAPQNLFRHHLNGMAHRFQSGMTKPAVSLLLLELFNYRLLPLYRFHNKLKQLIFDIAKIIITVKVKRGEHRLFRLAENLGINLILNMKDVLLVKKELKGATTEFTETLNRIMVLNLAFTMKTRGIADFEQMIILKPALEQILASINHTWSEKTMRHFPPLLREALANRIDTRAHVIQSWQQAEHTVMSHCRQLLSANSDPSYVSQYIQHSLPAHRQFLCAGAWMSMDFERPDSISIANLGRTLKEFSPEEVTTNVYMMVDVLLHHIHVQLQHGHSLQNLLLATSAGLAHFMWNQELLPFDIVLLALTDRDDDAHALRLVVGLLLDRPEFQQRVQTYYVHRGQTEHWMQLGPFQRPEYPQALGSHLAGKDRFPLFFDDMCLRALPVIPLIVYRLIENDATETAERLLHVYTPLIFYHPTRFSFVRDTLAYFYGHLPTKLVRRLLGSLDLPKIPFSETFLQQIKAFNTGSSPSYEYFHNLLVGLVNNVIPPLHGKPGTSATGGDGLLSSRFVLNRNQAAASTANNTTEVNKAFYLHQDPGSYNQLLLETAVVELLSLPPPPNQIVAMLIHIAVKLPTSFPQGGPPKTPQSPSSGGEALSGQSSSGLNNSSPQFTHSPLMIQACGLLLAQLPVAFHGAIYSETARIIKKDCWWLTDPSKQSRDLDAIFGYSTWDPSWGARDDTATVIANTVTLLHTLQSNLPFEWLEGMHSVITQQRPFVSVVHLRLAYRIMGPLLPRLLSRPLFAKTLALLFTILADVFGRNSQVPSATEATDIVDLVDFLHHAVMMEVQATGQAGGRPRPETLVLCSKAVERLRPDVQLLFRHLSPDGASSIYAATHPKLQRPGSSSLMGSVM
Length1580
PositionTail
OrganismPhyscomitrella patens subsp. patens (Moss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Bryophyta> Bryophytina> Bryopsida> Funariidae> Funariales> Funariaceae> Physcomitrium.
Aromaticity0.08
Grand average of hydropathy-0.028
Instability index41.17
Isoelectric point7.03
Molecular weight176855.30
Publications
PubMed=18079367
PubMed=29237241

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17834
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.83|      22|      26|     171|     195|       1
---------------------------------------------------------------------------
  172-  193 (41.42/21.81)	TPASTPASPSPSSNLLTS.SAHG
 1309- 1331 (33.41/13.78)	GPPKTPQSPSSGGEALSGqSSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      97.00|      22|      25|     902|     924|       2
---------------------------------------------------------------------------
  877-  891 (22.83/10.63)	.....W..SEKT.MRHFPPLLRE
  902-  924 (38.72/28.52)	HVIQSWQqAEHTVMSHCRQLLSA
  930-  948 (35.45/20.84)	YVSQYIQ...HSLPAH.RQFLCA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.02|      38|      40|     462|     501|       3
---------------------------------------------------------------------------
  462-  501 (63.75/49.34)	ELMQPLPTGSTNSTVTeAGRWQEWLMfADLFYFFMSTSCL
  505-  542 (64.27/40.17)	ELIDKLSLRFANGTVM.ASNHVTWLL.AQVFRLEIVTSAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.93|      10|     201|     409|     420|       4
---------------------------------------------------------------------------
  409-  418 (20.37/11.14)	VSTDWWKKVL
  613-  622 (21.55/ 6.47)	VIDEWWKQVM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.93|      28|     673|     800|     869|       5
---------------------------------------------------------------------------
  640-  668 (47.26/11.79)	MVWVLSNTM.TQPISE.ALMIWFRSSgLSEI
  840-  869 (39.67/29.85)	MVLNLAFTMkTRGIADfEQMIILKPA.LEQI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.59|      12|      14|     319|     330|       6
---------------------------------------------------------------------------
  319-  330 (22.85/17.25)	LQVERWPDDEAL
  335-  346 (20.74/14.85)	LEVHRRRDKIAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.53|      16|     673|     375|     394|       8
---------------------------------------------------------------------------
  355-  370 (28.84/17.35)	LHCPTFAT.LRVSSLTY
  378-  394 (24.69/14.52)	LHGEDVATaIPKGSVEW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17834 with Med23 domain of Kingdom Viridiplantae
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