<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17793

Description Uncharacterized protein
SequenceMFFMQELGDRTSPSIQYVRQLLPLPKVTAEVVVCQPMGCLTDTKGNKIAGFDSIDKKQGLQVFEKQRVSPWDLLEGHKNPAPLSWSWFGAVRMERKPLWYEDTHRLLKYHTHSLLKSPAYFLDPPPLPPEDLDPPQEKPCSCVYCNQLKDDGKADTPNSSDQSPRGVGGNKRPKAQRRRRPKAGGPGVPANGQPVMSGMPQQVQQQPQPPVPHMAYPNQGAMFPTQSQWTYNQQQQQQQQQQQQQQQQQQQQQQQQGYYSSQQLQAVGGPRFERPLNQSNPKQALSQMLRMRLPSNQYLGSQQPPPGFPQSMQRQQFIRQQLRAQHGAPGMQPPPQQGMFPQQQGAPAMYTGMQQGMNQSYAGYGGQPGPQMVSQQQLMGQAGQGMMGGFPGQQGGGFVSQQQPPGMMTTGGPIAPQQPRGAGDYMGPQGGMTAQQRAMAVQQGARPTYLQAPNVTMAAMGGPMGQQGQGQPQPAPPYGRAGAGGPSGAQGPPPPHTAQQQQQQNQQFQQQRMRQQMIAAQQPNQQAPALVAHLQRQLSQQQAGGNQPNQQHHPYSHQPPPY
Length562
PositionKinase
OrganismCryptotermes secundus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Polyneoptera> Dictyoptera> Blattodea> Blattoidea> Termitoidae> Kalotermitidae> Cryptotermitinae> Cryptotermes.
Aromaticity0.07
Grand average of hydropathy-1.040
Instability index73.76
Isoelectric point9.85
Molecular weight61971.98
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17793
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     727.76|     147|     264|     134|     306|       1
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   16-  126 (121.15/18.30)	.................................................................................QYVRQlLPLPKVTAEVVVCQpmGCLTDTKGN.....KIAGfDSIDKKQGLQVFEKQRVS....PWDLLEG....HKNPAPLswSWFGAVRMERkPLWYEDTHRLL....KYHTHSLLKSPAYF....LDPPP
  134-  306 (269.00/76.31)	PPQEKpcscvycnqlkddgkadtpnssdQSPRGVGGNKRPK....AQRR.......R.RPK.AGGPGVPANGqpvMSG.MPQQVQQ.QPQPPVPHMAYPNQ..GAMFPTQSQ.....WTYN.QQQQQQQQQQQQQQQQQQ....QQQQQQG....YYSSQQL..QAVGGPRFER.PLNQSNPKQAL....SQMLRMRLPSNQYLG..SQQPPP
  308-  405 (155.39/29.54)	FPQSM................................QRQQ....FIRQ.......QlRAQ.HGAPG........M.............QPP.......PQ..QGMFP..............QQQG...APAMYTGMQQG....MNQSYAG....Y...........GG....Q.PGPQMVSQQQLmgqaGQGMMGGFPGQQGGGfvSQQQPP
  416-  561 (182.22/36.30)	P...........................QQPRGAGDYMGPQggmtAQQRamavqqgA.RPTyLQAPNVTMAA...MGGpMGQQGQG.QPQPAPP...YGRA..GAGGPSGAQgppppHT.A.QQQQQQNQQFQQQRMRQQmiaaQQPNQQApalvAHLQRQLsqQQAGG...NQ.PNQQHH.................P...Y....SHQPPP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17793 with Med12 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PAYFLDPPPLPPEDLDPPQEKPCSCVYCNQLKDDGKADTPNSSDQSPRGVGGNKRPKAQRRRRPKAGGPGVPANGQPVMSGMPQQVQQQPQPPVPHMAYPNQGAMFPTQSQWTYNQQQQQQQQQQQQQQQQQQQQQQQQGYYSSQQLQAVGGPRFERPLNQSNPKQALSQMLRMRLPSNQYLGSQQPPPGFPQSMQRQQFIRQQLRAQHGAPGMQPPPQQGMFPQQQGAPAMYTGMQQGMNQSYAGYGGQPGPQMVSQQQLMGQAGQGMMGGFPGQQGGGFVSQQQPPGMMTTGGPIAPQQPRGAGDYMGPQGGMTAQQRAMAVQQGARPTYLQAPNVTMAAMGGPMGQQGQGQPQPAPPYGRAGAGGPSGAQGPPPPHTAQQQQQQNQQFQQQRMRQQMIAAQQPNQQAPALVAHLQRQLSQQQAGGNQPNQQHHPYSHQPPPY
118
562










Molecular Recognition Features






MoRF SequenceStartStop




1) ALVAHLQRQL
529
538