<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17789

Description Uncharacterized protein
SequenceMTSSIGGTASTMETAAGLSDFAQHVLRQICSQEWVLERCLQNPEELCHTDMLLDSMLTPKQAQRLLHMICYPETTAATEESLDQRDIIARILENLDQWTLRMSWLDLQLMFTQFPPGSSELNQWLDTVAKAAIDVFQLTSGGATGGLDGKEENRSGLRPNKPGSIWLVAPLVSKLPSAVQGRVLKVAGQVLESGNWSSKNRDKERNVQRSSSLLSHQPFLSLVLTCLKGQDEQREGLLTSLHSQLNQFLMLSKDVSGV
Length258
PositionKinase
OrganismCryptotermes secundus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Polyneoptera> Dictyoptera> Blattodea> Blattoidea> Termitoidae> Kalotermitidae> Cryptotermitinae> Cryptotermes.
Aromaticity0.05
Grand average of hydropathy-0.249
Instability index43.10
Isoelectric point5.42
Molecular weight28578.26
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17789
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.83|      16|      26|      94|     109|       2
---------------------------------------------------------------------------
   94-  109 (31.35/22.85)	NLDQW..TLRMSWLD.LQL
  120-  138 (19.48/11.48)	ELNQWldTVAKAAIDvFQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.74|      13|      14|      30|      43|       3
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   30-   43 (21.86/18.79)	CSQEWVLERCLqNP
   47-   59 (24.88/15.88)	CHTDMLLDSML.TP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17789 with Med12 domain of Kingdom Metazoa
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