<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17782

Description F-box-like/WD repeat-containing protein ebi
SequenceMPDVVASRQNQQNQQKQQIVKTEMQDTNGEEAVTSNVTENMEVDGSIEIPPSKATVLRGHESEVFICAWNPTTDLLASGSGDSTARIWDMSDNSSSPNQLVLRHCIQKGGTEVPSNKDVTSLDWNCDGTLLATGSYDGYARIWTTDGRLASTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCTQQFSFHSAPALDVDWQTNTSFASCSTDQCIHVCKLSVDKPIKSFQGHTNEVNAIKWDPQGNLLASCSDDMTLKIWSMKQETCVHDLQAHSKEIYTIKWSPTGPGTPNPNMNLILASASFDSTVRLWDVDHGACIHTLTKHTEPVYSVAFSPDGKFLASGSFDKCVHIWSTQSGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFVLDLRKL
Length406
PositionTail
OrganismCryptotermes secundus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Polyneoptera> Dictyoptera> Blattodea> Blattoidea> Termitoidae> Kalotermitidae> Cryptotermitinae> Cryptotermes.
Aromaticity0.08
Grand average of hydropathy-0.390
Instability index33.52
Isoelectric point5.59
Molecular weight44383.04
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17782
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     317.56|      33|      39|     124|     156|       1
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   45-   91 (41.25/18.65)	GSIeippskATVLRGH................esevficaWNPTTD.........LLASGSGDSTARI..W.D.MS
   92-  146 (37.75/16.53)	DN.......SSSPNQ.lvlrhciqkggtevpsnkdvtsldWNCDGT.........LLATGSYDGYARI..W.T.TD
  147-  188 (37.66/16.47)	GRL......ASTLGQH................kgpifalkWNKRGN.........YILSAGVDKTTII..WdA.AS
  189-  230 (36.66/15.86)	GQC......TQQFSFH................sapaldvdWQTN.T.........SFASCSTDQCIHVckL.S.VD
  231-  271 (41.31/18.69)	KPI......KSFQG.H................tnevnaikWDPQGN.........LLASCSDDMTLKI..W.SmKQ
  272-  321 (41.34/18.70)	ETC......VHDLQAH................skeiytikWSPTGPgtpnpnmnlILASASFDSTVRL..W.D.VD
  323-  363 (50.99/24.56)	GAC......IHTLTKH................tepvysvaFSPDGK.........FLASGSFDKCVHI..W.S.TQ
  365-  402 (30.60/12.19)	GQL......VHSY.KG................tggifevcWNSRGD.........KVGASASDG..SV..F.V.LD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17782 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MPDVVASRQNQQNQQKQQIVKTEMQDTNGEEAVTSNVTENMEVDGSIEIPPSKA
1
54










Molecular Recognition Features






MoRF SequenceStartStop




1) VFVLDLRKL
398
406