<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17768

Description Uncharacterized protein
SequenceMNNENDIIAHFSVPGTPPLFLCLLWKMILETDRISPIAYKILERIGARALSAHLRKFCDYLVFEFANSGGGQHVNKCVDAINDMIWKYNIVTIDRLVLCLALRTQEGSEAQVCFFIIQLLLLKAAELRNRVQEFVKENSPEHWKQSNWHEKHLAFHRKYPEKFAPEGILEQSGGPSSPYHSLPVYFGNVCLRFLPVFDIVIHRYLELPPVTKSLETLLEHLGCLYKFHDRPVTYLYNTLHYYERKLRDRPPLKRRLVAAVLGSLRDIRAPGWSLSEPYQTYMQRQTDETNWIPELDYYVRLVRRIVETVSGKPHFPATDWRFNEFPNPAAHALYVTCVELMAVPVTPALVGTNLLDVVAKGYTVIPSNQIHMWINSVGLIMAALPDSYWSVLHDRLVEVITSPQLTQWKYRNTPFQLFNFAATHDSLLENKFSYMLALAHSMWHHAGVGQISTVPQFVREKVHPVVRTEEQFLFLCHLVGPFLQRFNTDRPRCVTDLTVELYELLEQVDKNVTHMHYMDPICDLLYHIKYMFVGDLMKNEVECIIRRLRPALQMRLRFIAHLNIEEINAT
Length570
PositionTail
OrganismCryptotermes secundus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Polyneoptera> Dictyoptera> Blattodea> Blattoidea> Termitoidae> Kalotermitidae> Cryptotermitinae> Cryptotermes.
Aromaticity0.11
Grand average of hydropathy-0.090
Instability index48.04
Isoelectric point7.37
Molecular weight66354.24
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17768
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     602.38|     193|     257|      30|     243|       1
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   30-  243 (301.48/347.90)	ETDRISPIAY......KILERIGARalsAHLrKFCDYLVFEFANSGGGQHVNKCVDAINDMIwKYNIVTIDRLVLCLALRTQEGSEaQVCFFIIQLLLLKAA.......ELRNRVQEFVkeNSPE..HWKQSNWHEKHLAFHRKYpekfapEGILEQS.GGPSSPYHSLPVYFGNVCLRFLPVFdivIHRylELPPVTKSLE..TLLEHL.G.CLYKFH.DRP..VTYLynTLHYYE
  288-  503 (300.90/268.13)	ETNWIPELDYyvrlvrRIVETVSGK...PHF.PATDWRFNEFPNPAAHALYVTCVELMAVPV.TPALVGTNLLDVVAKGYTVIPSN.QIHMWINSVGLIMAAlpdsywsVLHDRLVEVI..TSPQltQWKYRNTPFQLFNFAATH......DSLLENKfSYMLALAHSMWHHAGVGQISTVPQF...VRE..KVHPVVRTEEqfLFLCHLvGpFLQRFNtDRPrcVTDL..TVELYE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.43|      11|     299|     244|     256|       2
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  244-  256 (16.40/16.45)	RKLrdRPPLKRRL
  546-  556 (21.03/12.61)	RRL..RPALQMRL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17768 with Med23 domain of Kingdom Metazoa
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