<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17767

Description Mediator of RNA polymerase II transcription subunit 23 (Fragment)
SequenceMGTESQINNIVSEILKVEGIEEAFSCFLVHRPEQETEKVQNFQQELQSVLSGLNAEQQETGVRAYLLKAAEMTNHSRLQLLLSLLENLVASSILPARMVCECILSCEKLQYQQEDFWVECFRLIRKIIGGVDYKGVREIMKGCREKAQTIPARLNASVLPQLKALENVIEYIFDRNACLLPGYFIVTEIQKAYPDNKNWPHWKLAHLLSSFVESFRATAQMVSIIGHSHMLPVVEHSGYADHLINPWKLDPSTLKFSLKGNLPYDRELLEPQTRLLRYVLEQPYSRDMVCSMLGLQKQHKQRCVALEEQLVELVILAMERSETEADTDDISNSHWLWLHLSSQLIYLVLFQFATFPNIVMALHDKLAGRDLRRGRDHLMWVLLQFISGSIQRNPLNNFLPVLKLYDLLYPEKEPLAVPDFNKALCTHQMAMTCIWIHLLKKAQSEHLNIHRPIPHTLKVHHEFLQHLVMPNNTGLCMGSDYRIALLCNAYSTNQEYFSRPMAALVDTILGTQKGPQQPPLPPLANNAALASGPTTPLSMSILDSLTVHSKMSLIHSIVTHVIKLAQSKSNMALAPALVETYSRLLVYTEIESLGIKGFISQLLPTVFKSHAWGILYTLLEMFSYRMHHIQPHYRVQLLSHLHSLAAVPQTNQTQLHLCVESTALRLITGLGSAEVQPQLSRFLSEPKTLVSAESEELNRALVLTLARSMHVTGTGNR
Length717
PositionTail
OrganismCryptotermes secundus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Polyneoptera> Dictyoptera> Blattodea> Blattoidea> Termitoidae> Kalotermitidae> Cryptotermitinae> Cryptotermes.
Aromaticity0.07
Grand average of hydropathy-0.040
Instability index48.63
Isoelectric point6.90
Molecular weight81377.62
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17767
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     255.56|      67|     120|     379|     445|       1
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  379-  445 (118.73/74.55)	MWVLLQFISGSIQRNPLNNFLP.VL.K......LYDLL..YPEKEPLAVPDFNKALCTH.QMAMT.CIWIHLLKKAQSE
  501-  568 (89.64/54.42)	MAALVDTILGT.QKGPQQPPLP.PLaN......NAALA..SGPTTPLSMSILD.SLTVHsKMSLIhSIVTHVIKLAQSK
  585-  640 (47.18/25.04)	L.VYTEIESLGI.KGFISQLLPtVF.KshawgiLYTLLemFSYRMHHIQPHYRVQLLSH....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.54|      14|      19|     246|     264|       2
---------------------------------------------------------------------------
  249-  264 (21.33/23.87)	LDPST..LKFSLKgnLPY
  269-  284 (22.20/ 6.81)	LEPQTrlLRYVLE..QPY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.88|      10|      20|     150|     160|       3
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  150-  160 (14.47/11.27)	IPARlNASVLP
  172-  181 (20.41/11.29)	IFDR.NACLLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.39|      18|     127|     191|     212|       5
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  195-  212 (35.62/22.48)	DNKNWPHWKLAHLLSSFV
  328-  345 (33.77/12.46)	DDISNSHWLWLHLSSQLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      53.47|      12|      36|      99|     110|       6
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   99-  110 (22.62/14.93)	VCECILSC.EKLQ
  117-  127 (14.53/ 7.12)	WVECFRLI.RKI.
  136-  148 (16.32/ 8.84)	VREIMKGCrEKAQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17767 with Med23 domain of Kingdom Metazoa
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