<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17762

Description Uncharacterized protein
SequenceMQHSPSEIKEKLLKALDKEYNVVDMAAVVEIIAILERSVITKEALETTRLGKYVNELRRKTSNELLARRAKDLVRRWRVMIQENNTAGSSTMCPHIPTAMHHTNGTNLLLHQVSPGLRSNASPILPQFGSATGRCYSPTFASGGDAANNFIPGYSHSPVKSFHTGDSCLSSSLHFNESSSISNSSTSPKSHPLAPQVKLRSGSSNADLGHQFHPSILVNMDSVPKTHASNKRLRKDSPSPEDISTKKVTRPNGQVVKGYDFMKACMPAQPDIHGDGSRDSISGLSQGSSSCEVIPPPHNKVPIVDLMFEMTPAAVTTTVTTATTTTVATMVTSSTTSAPDPFTRPSICSTFIVTDTTTSAHNTTTNTAAPSTALIGTTTVTTTVCSTTITGTVIGSNATPIPPKTRRKKPTKLRRLSASASVTQATSVGDILKEKIASKARTPKVKTTQELVASVQAKTGGASGNLPEDKLYNVNVPSFENKPSLAKCILMSRGTPTDALEISRNKTEHIAKFLQSQSDFHPMQEDPSILSLEELEELRLQKHLGSLPGSSGGDNYNSSPAEVSSLSKLSKDILRQSSSSKDSQSASAVVMNIQDRTVEDILAKLPPIDVDAICWDESMTGGSDLEGPVVKEVTEEIIGKLRTEHIESLNGNVNEAASYEDSDNFCEWHEMVSKKSYQGEFLHILPYVVID
Length691
PositionUnknown
OrganismCryptotermes secundus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Polyneoptera> Dictyoptera> Blattodea> Blattoidea> Termitoidae> Kalotermitidae> Cryptotermitinae> Cryptotermes.
Aromaticity0.04
Grand average of hydropathy-0.394
Instability index57.19
Isoelectric point7.07
Molecular weight74478.10
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17762
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     131.61|      28|      32|     312|     339|       1
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  312-  339 (46.48/21.80)	PAAVTTTVTTA..TTTTVATMVTSSTTSAP
  345-  370 (44.27/20.46)	PSICSTFIVTD..TTTSAHN..TTTNTAAP
  373-  402 (40.86/18.40)	ALIGTTTVTTTvcSTTITGTVIGSNATPIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.05|      32|      32|     404|     435|       2
---------------------------------------------------------------------------
  404-  435 (49.22/27.27)	KTRRKKPTKLRRLSASASVTQATSVGDILKEK
  439-  470 (50.82/28.37)	KARTPKVKTTQELVASVQAKTGGASGNLPEDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.98|      26|      32|     122|     148|       3
---------------------------------------------------------------------------
   88-  107 (22.75/ 9.45)	.......GSST.MCpHIPT..AMHHTNGTN
  122-  148 (44.54/30.83)	SPIlPQFGSATGRC.YSPT..FASGGDAAN
  157-  183 (33.69/18.20)	SPV.KSFHTGDS.C.LSSSlhFNESSSISN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.94|      19|      33|     188|     208|       4
---------------------------------------------------------------------------
  188-  208 (29.56/23.84)	PKSHplAPQVKLRSGS.SNADL
  224-  243 (30.38/17.29)	PKTH..ASNKRLRKDSpSPEDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.84|      25|      25|     550|     574|       5
---------------------------------------------------------------------------
  550-  574 (40.45/27.12)	SSGGDNYNSSPAEVSSLSKLSKDIL
  578-  602 (39.39/26.22)	SSSKDSQSASAVVMNIQDRTVEDIL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17762 with Med26 domain of Kingdom Metazoa
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