<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17759

Description Mediator of RNA polymerase II transcription subunit 28
SequenceMAATTNGNGNLVDEFEEAFQSCLSVLTKEEVLPTMEKDEIRVEVDHTILRFIDLARQMEAFFLQKRFLLSALKPELVVKEDTNELRQELVRKEELIKRHYEKIAVWQNLFADLQGWAKSPAQGPASSGLPNGNSGPQPPAPPTGAPPQPNMSSNMQQQLQQQQLQQQQIQQQQQQQLQQQIQQQQMQQQIQQQQMQQQ
Length198
PositionHead
OrganismCryptotermes secundus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Polyneoptera> Dictyoptera> Blattodea> Blattoidea> Termitoidae> Kalotermitidae> Cryptotermitinae> Cryptotermes.
Aromaticity0.05
Grand average of hydropathy-0.839
Instability index76.52
Isoelectric point4.99
Molecular weight22742.36
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17759
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.32|      15|      15|     165|     179|       1
---------------------------------------------------------------------------
  165-  179 (31.02/10.62)	QQQQIQQQ.QQQQLQQ
  182-  197 (28.30/ 9.02)	QQQQMQQQiQQQQMQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.63|      32|      34|      26|      59|       2
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   26-   59 (44.54/36.42)	LTKEEVLPTMeKDEIRVEVDHTILRfIDLARQME
   63-   94 (51.10/31.87)	LQKRFLLSAL.KPELVVKEDTNELR.QELVRKEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.65|      15|      16|     120|     134|       3
---------------------------------------------------------------------------
  120-  134 (28.08/17.06)	PAQGPASSGLPNGNS
  139-  153 (30.57/19.19)	PAPPTGAPPQPNMSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17759 with Med28 domain of Kingdom Metazoa
Unable to open file!