Description | Mediator of RNA polymerase II transcription subunit 1 |
Sequence | MDKAKEWQLELLMEKLRSKAGQFKSFVESAKALRMSLLDKRYPVDSVEKNQLQKCLDILQHSIKVTSLQGMVERLESVTRQLGLKFSPGGSPLDWFISSDMFYLEVMLESTGGVKDVRIHHEGKVEQQSCEELVSCLSNGDFADFTAQLEGLASIYQLNAEKKVKCKAFSALQSLEADLATLATFQAFIKEPFNLVHKSPVGILEKRRGGHAMKLTYLVPPYDLLDQQTNSSLPLSVQEVTSRNLGYSVMVCMEGSAAHKLQTAPLISVNRSPNGKSSPLYAPLSANNSATLPACFALRLNNPMPMCLPLVRRIQQITEMECGDLSTPHPLLSLVTQHASTGQLDCANNRGLFVTLPDQQHCYFMTESKNLEGILVSNISFTHPAHVPQILMLLRQQALFNVLVSSCIRPASKHADLESVVMLEVTALSWQHLSVSFEHPLEETMTTAELDLTDISSIKCKVYGASNGENGCTPEHASKVLQRCWSIPVTMRSLIRLWQSQNLRSNGLAAGGNLSLPPGSDPGRGHGGSNGSHSMPPDFDVSHIKTEPDGGSLPHSQSLSGSGSRQGFGPDMPDTGVSFQSPGNPMDSSVSNTFQFGALLSGQGSGGKGPVLLNMLSEQTSNSKKQRKRTNKDGMWRSPKRKQSEECEIVLETSSSDSTPLGTPTSRDAPMETSLDCEEEKTGSDFGEEEIMPVQEVEEIIVRKARKEKKTSPPTIILDLAESKSLVAPSVSITPITSSSSNFNSVLTGMGLERRPGIEIIPIVSTPATSLHTSITITPISSKVVAADDRNNRDRKGGKSRTEDKMRPDKKRNKRKREDSPSGCSGGSGIAMGPPDKLPPKQDPLSKPVSVSIKPTESPPLTSVRPSSPASALRKVTSSPTHLNISMTKSGSSKPSTSHQSPKHSPGYTSSPKHHGTSSPKQQSSGGSGKPSMSALKSAANSPSTAGKSGSDVAKVKSSSSKDKDRKVSSSFSGGSSGSGSSPKLKSSSVKLKQLDMTSGSGDGSTGSQGGAGTPPSVTIDGSKSLSAVPQARNRKGSLSAVIDKLKSAQHQGPEPGEVVKEGRGSGTNPSTKIPGDTSGSTVSSSSKNPGEYMVKPSSEGIKITINKTRTKDSKSGVVKTSSSSTGSGSPKTHTGLKPGVNSGPASKKPHQMLQQKSASGNSSSSGISSSSSKAGSSSASGNPSSKIPSSTKSSSSPVSGILSKSTSKSSGSPKMSSLADASRRDNKPRPPKTSSDRDKSVFSKGADARKSSPVGMRDELESERPLKLVTAHAKMEPSLPPQLMVEGMIKSLDTKFQIPKLSARSGNLNEGDSKKQSSDKTAIGGTESSSRMDSGARPLDLVGKADASNASAKFQSLSKTTDDLKGSKIPAVVSVTPQIAISSLTTQALKQPTTTFPSVSSKLQDISIDTGPQISTPTSVAIVTSLPSSSSEPSSRESVEISRMKPDLSRSAQISGNNAKEETTIQATGKLENPAKSYSANNNNDPSVLSALHPNKSLDSSQNKFTSSSSQKQAEDSKKLVNLSDISSKSTGLNKMTPTPTTSQEAAEILLDMSASTSLPNKPLPADPQPGKLATVPERAVAVSAPSRRNTPPPPLPPPQPSVQVHIVQSPAATPTTASPMVITSPHSASPCSIDDELMDEALVGMGK |
Length | 1649 |
Position | Middle |
Organism | Cryptotermes secundus |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Polyneoptera> Dictyoptera> Blattodea> Blattoidea> Termitoidae> Kalotermitidae> Cryptotermitinae> Cryptotermes. |
Aromaticity | 0.03 |
Grand average of hydropathy | -0.544 |
Instability index | 57.32 |
Isoelectric point | 9.34 |
Molecular weight | 174226.22 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364059 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP17758 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 8| 333.66| 47| 47| 855| 901| 1 --------------------------------------------------------------------------- 581- 620 (32.22/ 6.77) SPGNPMDSSVS.................NTFQFGALLSGQG..................................S..........GGKGPVLLNMlsEQT 621- 669 (36.20/ 8.65) SNSKKQRKRTN.................KD.....GMWRSP...............KRKQSeeceivletsSSDST..........PLGTP..TS...RDA 736- 774 (30.93/ 6.15) ........ITS.................SSSNFNSVLTGMG...............LERRP..........GIEII..........PIVSTPATSL..HTS 810- 867 (51.57/15.94) KKRNK.RKRED.................SPSGCS...GGSGiamgppdklppkqdpLSKPV..........SVSIK..........PTESPPLTSV..RPS 868- 910 (70.35/24.84) SPASALRKVTS.................SPTHLNISMTKSG...............SSKPS..........TSHQS..........PKHSPGYT......S 1038- 1098 (32.15/ 6.73) SLSAVIDKLKSaqhqgpepgevvkegrgSGT..NPSTKIPG...............DTSGS..........TVSSS.......sknPGE....YMV..KPS 1144- 1196 (34.08/ 7.65) GPAS..KK.....................PHQMLQQKSASG...............NSSSS........giSSSSSkagsssasgnPSSKIPSSTK..SSS 1498- 1540 (46.17/13.38) SLDSSQNKFTS.................SSSQKQAEDSKKL...............VN..............LSDI..........SSKSTGLNKM..TPT --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 90.03| 26| 26| 937| 962| 2 --------------------------------------------------------------------------- 921- 943 (30.18/ 8.61) KQQSSGGSG....................KPSMSAlKSAANSP 944- 970 (33.49/10.55) STAGKSGSD................VAKVKSSSSKdKDRKVSS 1174- 1214 (26.36/ 6.38) KAGSSSASGnpsskipsstksssspVSGILSKSTS.KSSG.SP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 67.33| 23| 27| 1379| 1403| 3 --------------------------------------------------------------------------- 1379- 1403 (36.11/21.31) QIAISslTTQALKQPT.....TTFPSVSSK 1406- 1433 (31.22/13.05) DISID..TGPQISTPTsvaivTSLPSSSSE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 90.17| 27| 27| 110| 136| 4 --------------------------------------------------------------------------- 110- 136 (48.17/25.21) STGGVKDVRIHHEG..KVEQQSCEELVSC 138- 166 (42.00/21.23) SNGDFADFTAQLEGlaSIYQLNAEKKVKC --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 107.52| 25| 27| 300| 324| 5 --------------------------------------------------------------------------- 279- 304 (36.82/23.94) PLYAPLSAN.NSATLPACfaLRLNNPM 305- 329 (45.74/31.82) PMCLPLVRRIQQITEMEC..GDLSTPH 330- 348 (24.97/13.48) PL.LSLVTQHASTGQLDC..AN..... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 121.59| 27| 27| 1561| 1587| 6 --------------------------------------------------------------------------- 1561- 1587 (49.20/23.42) PNKPLPADPQPGKLATVPERAVAVSAP 1593- 1612 (39.65/17.29) PPPPLPP.PQPSVQVHI......VQSP 1613- 1634 (32.75/12.85) AATPTTASPM...VITSPHSASPCS.. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 49.72| 15| 27| 973| 987| 7 --------------------------------------------------------------------------- 560- 574 (23.56/ 7.89) SGSGSRQGFGPDMPD 973- 987 (26.16/ 9.81) SGGSSGSGSSPKLKS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 67.58| 24| 27| 374| 400| 8 --------------------------------------------------------------------------- 386- 410 (37.52/27.31) HVP.QILMLLRQQAL.FnVLVS.SCIRP 414- 440 (30.06/20.14) HADlESVVMLEVTALsW.QHLSvSFEHP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 51.16| 14| 17| 507| 521| 11 --------------------------------------------------------------------------- 507- 521 (22.65/12.86) GlAAGGNLSLPPGSD 527- 540 (28.51/12.81) G.GSNGSHSMPPDFD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 83.59| 17| 17| 1282| 1298| 12 --------------------------------------------------------------------------- 1282- 1298 (26.26/12.36) P.QLMVE.GMIKS..LDTKFQ 1300- 1317 (20.81/ 8.18) P.KLSARsGNLNE..GDSKKQ 1320- 1338 (18.26/ 6.23) D.KTAIG.GTESSsrMDSGAR 1339- 1356 (18.26/ 6.23) PlDLVGK.ADASN..ASAKFQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 33.08| 10| 26| 1108| 1118| 13 --------------------------------------------------------------------------- 1108- 1118 (13.59/11.87) KTRTkDSKSGV 1132- 1141 (19.49/11.77) KTHT.GLKPGV --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) ATVPERAVA 2) EILLDM 3) PKLKSSSVKLKQLDMT 4) SKKPHQML 5) SLSAVIDKLKSAQ | 1575 1549 983 1147 1038 | 1583 1554 998 1154 1050 |
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