<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17756

Description Uncharacterized protein
SequenceMRSLIRLWQSQNLRSNGLAAGGNLSLPPGSDPGRGHGGSNGSHSMPPDFDVSHIKTEPDGGSLPHSQSLSGSGSRQGFGPDMPDTGVSFQSPGNPMDSSVSNTFQFGALLSGQGSGGKGPVLLNMLSEQTSNSKKQRKRTNKDGMWRSPKRKQSEECEIVLETSSSDSTPLGTPTSRDAPMETSLDCEEEKTGSDFGEEEIMPVQEVEEIIVRKARKEKKTSPPTIILDLAESKSLVAPSVSITPITSSSSNFNSVLTGMGLERRPGIEIIPIVSTPATSLHTSITITPISSKVVAADDRNNRDRKGGKSRTEDKMRPDKKRNKRKREDSPSGCSGGSGIAMGPPDKLPPKQDPLSKPVSVSIKPTESPPLTSVRPSSPASALRKVTSSPTHLNISMTKSGSSKPSTSHQSPKHSPGYTSSPKHHGTSSPKQQSSGGSGKPSMSALKSAANSPSTAGKSGSDVAKVKSSSSKDKDRKVSSSFSGGSSGSGSSPKLKSSSVKLKQLDMTSGSGDGSTGSQGGAGTPPSVTIDGSKSLSAVPQARNRKGSLSAVIDKLKSAQHQGPEPGEVVKEGRGSGTNPSTKIPGDTSGSTVSSSSKNPGEYMVKPSSEGIKITINKTRTKDSKSGVVKTSSSSTGSGSPKTHTGLKPGVNSGPASKKPHQMLQQKSASGNSSSSGISSSSSKAGSSSASGNPSSKIPSSTKSSSSPVSGILSKSTSKSSGSPKMSSLADASRRDNKPRPPKTSSDRDKSVFSKGADARKSSPVGMRDELESERPLKLVTAHAKMEPSLPPQLMVEGMIKSLDTKFQIPKLSARSGNLNEGDSKKQSSDKTAIGGTESSSRMDSGARPLDLVGKADASNASAKFQSLSKTTDDLKGSKIPAVVSVTPQIAISSLTTQALKQPTTTFPSVSSKLQDISIDTGPQISTPTSVAIVTSLPSSSSEPSSRESVEISRMKPDLSRSAQISGNNAKEETTIQATGKLENPAKSYSANNNNDPSVLSALHPNKSLDSSQNKFTSSSSQKQAEDSKKLVNLSDISSKSTGLNKMTPTPTTSQEAAEILLDMSASTSLPNKPLPADPQPGKLATVPERAVAVSAPSRRNTPPPPLPPPQPSVQVHIVQSPAATPTTASPMVITSPHSASPCSIDDELMDEALVGMGK
Length1159
PositionMiddle
OrganismCryptotermes secundus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Polyneoptera> Dictyoptera> Blattodea> Blattoidea> Termitoidae> Kalotermitidae> Cryptotermitinae> Cryptotermes.
Aromaticity0.02
Grand average of hydropathy-0.728
Instability index60.70
Isoelectric point9.78
Molecular weight119978.24
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17756
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     310.56|      47|      47|     365|     411|       1
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  360-  406 (79.10/24.84)	SVSIKPTE....SPPL.TSVRP...SSPASALRKVTS.SPTHLNISMTKSGS.SKPS
  407-  442 (58.02/15.94)	TSHQSPKH....SPGY.T.......SSPK...HHGTS.SPKQ....QSSGGS.GKPS
  455-  493 (42.50/ 9.39)	TAGKSGSD.......V.AKVKS...SSSKDKDRKVSS.S.....FSGGSSGSgSSP.
  628-  674 (36.95/ 7.04)	VVKTSSSStgsgSPKThTGLKPgvnSGPAS..KK.....PHQM..LQQKSAS.GNSS
  675-  709 (45.06/10.46)	SSGISSSS....SKAG.SSSAS...GNPSSKIP............SSTKS.S.SSPV
  710-  757 (48.94/12.10)	SGILSKST....SKSS.GSPKM...SSLADASRRDNKpRPPKTSSDRDKSVF.SKGA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     143.03|      30|      31|    1051|    1081|       2
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  907-  929 (28.04/ 8.88)	FPSVSS......KLQDISIDT...GPQISTPT....................
 1021- 1053 (37.69/15.53)	SQKQAEdskklvNLSDISSKS..TGLNKMTPT.................PTT
 1054- 1086 (42.00/22.21)	SQEAAE......ILLDMSAST..SLPNKPLPAdPQP...........gkLAT
 1087- 1128 (35.32/13.96)	VPERA.........VAVSAPSrrNTPPPPLPP.PQPsvqvhivqspaatPTT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.42|      15|      16|      22|      36|       3
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   22-   36 (30.79/12.50)	GNLSLPPGSDPGRGH
   41-   55 (27.63/10.46)	GSHSMPPDFDVSHIK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.87|      22|      22|     930|     951|       4
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  527-  547 (31.26/14.88)	SV.TIDGS.KSLSAV.PQARNRKG
  548-  571 (23.82/ 9.09)	SLsAVIDKLKSAQHQgPEPGEVVK
  930-  951 (34.78/17.62)	SV.AIVTSLPSSSSE.PSSRESVE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.35|      18|      22|     966|     987|       5
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  966-  987 (24.74/19.36)	SGNNAKEETTIQATgkleNPAK
  990- 1007 (31.61/15.42)	SANNNNDPSVLSAL....HPNK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.47|      23|      37|     126|     148|       6
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  126-  148 (40.32/20.64)	LSEQTSNSKKQRKRTNKDG.MWRS
  161-  184 (34.15/16.21)	LETSSSDSTPLGTPTSRDApMETS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     105.88|      21|      22|     834|     854|       7
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  796-  814 (26.29/11.11)	VEGMIKS..LDTKFQIP.KLSA
  815-  833 (25.37/10.45)	RSGNLNEG..DSKKQSS.DKTA
  834-  854 (32.64/15.70)	IGGTESSSRMDSGARPL.DLVG
  856-  877 (21.57/ 7.71)	ADASNASAKFQSLSKTTdDLKG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     161.77|      54|     301|     277|     333|       9
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  189-  225 (28.43/ 9.13)	...........................EEKTGSDFGEE.EIMPVQeveeiivRKARKEKKTSPPT
  233-  272 (48.91/22.71)	SKSLVAPSVSITPITS...SSSNFNSVLTGMGLERRPGiEIIP......................
  277-  333 (84.44/51.11)	PATSLHTSITITPISSkvvAADDRNNRDRKGGKSRTED.KMRPDK.......KRNKRKREDSPSG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.37|      11|     235|     337|     349|      10
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  337-  349 (18.31/ 9.70)	GSGiaMGPPDKLP
  575-  585 (22.06/ 7.28)	GSG..TNPSTKIP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17756 with Med1 domain of Kingdom Metazoa
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