<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17755

Description Uncharacterized protein (Fragment)
SequenceMLEVTALSWQHLSVSFEHPLEETMTTAELDLTDISSIKCKVYGASNGENGCTPEHASKVLQRCWSIPVTMRSLIRLWQSQNLRSNGLAAGGNLSLPPGSDPGRGHGGSNGSHSMPPDFDVSHIKTEPDGGSLPHSQSLSGSGSRQGFGPDMPDTGVSFQSPGNPMDSSVSNTFQFGALLSGQGSGGKGPVLLNMLSEQTSNSKKQRKRTNKDGMWRSPKRKQSEECEIVLETSSSDSTPLGTPTSRDAPMETSLDCEEEKTGSDFGEEEIMPVQEVEEIIVRKARKEKKTSPPTIILDLAESKSLVAPSVSITPITSSSSNFNSVLTGMGLERRPGIEIIPIVSTPATSLHTSITITPISSKVVAADDRNNRDRKGGKSRTEDKMRPDKKRNKRKREDSPSGCSGGSGIAMGPPDKLPPKQDPLSKPVSVSIKPTESPPLTSVRPSSPASALRKVTSSPTHLNISMTKSGSSKPSTSHQSPKHSPGYTSSPKHHGTSSPKQQSSGGSGKPSMSALKSAANSPSTAGKSGSDVAKVKSSSSKDKDRKVSSSFSGGSSGSGSSPKLKSSSVKLKQLDMTSGSGDGSTGSQGGAGTPPSVTIDGSKSLSAVPQARNRKGSLSAVIDKLKSAQHQGPEPGEVVKEGRGSGTNPSTKIPGDTSGSTVSSSSKNPGEYMVKPSSEGIKITINKTRTKDSKSGVVKTSSSSTGSGSPKTHTGLKPGVNSGPASKKPHQMLQQKSASGNSSSSGISSSSSKAGSSSASGNPSSKIPSSTKSSSSPVSGILSKSTSKSSGSPKMSSLADASRRDNKPRPPKTSSDRDKSVFSKGADARKSSPVGMRDELESERPLKLVTAHAKMEPSLPPQLMVEGMIKSLDTKFQIPKLSARSGNLNEGDSKKQSSDKTAIGGTESSSRMDSGARPLDLVG
Length923
PositionMiddle
OrganismCryptotermes secundus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Polyneoptera> Dictyoptera> Blattodea> Blattoidea> Termitoidae> Kalotermitidae> Cryptotermitinae> Cryptotermes.
Aromaticity0.02
Grand average of hydropathy-0.767
Instability index57.20
Isoelectric point9.78
Molecular weight95882.70
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17755
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     277.34|      47|      47|     434|     480|       1
---------------------------------------------------------------------------
   96-  139 (36.53/ 6.83)	....PPGSD..PGRGHGGSNGSHS.MPPDFDVSHIKTepdGGSLPHSQSLS
  396-  433 (42.71/ 9.50)	REDSPSGCSGGSGIAMGPPDKLPP.KQDPL............SKPVSVSIK
  434-  480 (77.07/24.35)	PTESPPLTSVRPSSPASALRKVTS.SPTHLNISMTKS...GSSKPSTSHQS
  481-  511 (38.72/ 7.78)	PKHSPGYT....SSPK...HHGTS.SPKQ....QSSG...GSGKPS.....
  749-  783 (43.68/ 9.92)	SSSSKAGSSSASGNPSS...KIPS.S........TKS....SSSPVSGILS
  784-  831 (38.64/ 7.74)	KSTSKSSGSPKMSSLADASRRDNKpRPPKTSSDRDKS...VFSKGADARKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     101.95|      26|      27|     534|     559|       2
---------------------------------------------------------------------------
  534-  559 (42.69/15.85)	K.VKSSSSKDKDRKV..SSSFSGGSSGS.G
  563-  589 (31.08/ 9.12)	K.LKSSSVKLKQLDM..TSGSGDGSTGSqG
  718-  746 (28.18/ 7.43)	PgVNSGPASKKPHQMlqQKSASGNSSSS.G
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      52.44|       9|      38|     140|     149|       3
---------------------------------------------------------------------------
  140-  149 (15.86/10.31)	GSGSrQGFGP
  181-  189 (19.60/ 8.38)	GQGS.GGKGP
  642-  649 (16.98/ 6.09)	GRGS..GTNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.77|      21|      27|     216|     236|       5
---------------------------------------------------------------------------
  198-  230 (25.64/11.43)	QTSNSK......kqrkrtnkdgmwRSPKRKQSEECEIVL
  231-  258 (23.26/ 9.60)	ETSSSD.........stplgtptsRDAPMETSLDCE..E
  259-  297 (19.88/ 6.98)	EKTGSDfgeeeimpvqeveeiivrKARKEKKTSPPTIIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.26|      20|     146|     157|     179|       6
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  157-  179 (32.45/22.83)	SFQSPG...NPMDSSVSNtfqFGALL
  304-  326 (29.81/13.10)	SLVAPSvsiTPITSSSSN...FNSVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.23|      15|      16|     861|     875|       7
---------------------------------------------------------------------------
  861-  875 (26.02/14.02)	PQLMVE.GMIKSLDTK
  879-  894 (21.21/10.17)	PKLSARsGNLNEGDSK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17755 with Med1 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GLAAGGNLSLPPGSDPGRGHGGSNGSHSMPPDFDVSHIKTEPDGGSLPHSQSLSGSGSRQGFGPDMPDTGVSFQSPGNPMDSSVSNTFQFGALLSGQGSGGKGPVLLNMLSEQTSNSKKQRKRTNKDGMWRSPKRKQSEECEIVLETSSSDSTPLGTPTSRDAPMETSLDCEEEKTGSDFGEEEIMPVQEVEEIIVRKARKEK
2) LHTSITITPISSKVVAADDRNNRDRKGGKSRTEDKMRPDKKRNKRKREDSPSGCSGGSGIAMGPPDKLPPKQDPLSKPVSVSIKPTESPPLTSVRPSSPASALRKVTSSPTHLNISMTKSGSSKPSTSHQSPKHSPGYTSSPKHHGTSSPKQQSSGGSGKPSMSALKSAANSPSTAGKSGSDVAKVKSSSSKDKDRKVSSSFSGGSSGSGSSPKLKSSSVKLKQLDMTSGSGDGSTGSQGGAGTPPSVTIDGSKSLSAVPQARNRKGSLSAVIDKLKSAQHQGPEPGEVVKEGRGSGTNPSTKIPGDTSGSTVSSSSKNPGEYMVKPSSEGIKITINKTRTKDSKSGVVKTSSSSTGSGSPKTHTGLKPGVNSGPASKKPHQMLQQKSASGNSSSSGISSSSSKAGSSSASGNPSSKIPSSTKSSSSPVSGILSKSTSKSSGSPKMSSLADASRRDNKPRPPKTSSDRDKSVFSKGADARKSSPVGMRDELESERPLKLVTAHAKMEPSLPPQLMVEGMIKSLDTKFQIPKLSARSGNLNEGDSKKQSSDKTAIGGTESSSRMDSGARPLDLVG
86
350
288
923










Molecular Recognition Features






MoRF SequenceStartStop




1) PKLKSSSVKLKQLDMTS
2) RPLDLV
3) SKKPHQM
4) SLSAVIDKLKSA
562
917
726
617
578
922
732
628