<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17749

Description Uncharacterized protein (Fragment)
SequenceMAGPQHSFPSGFPNAQQGTMRNQFGGAPQIGGLMSSAQQTGLVNQQPYGVGIQPNPQQVLAQQQQQQQQNQQLQIQQQQQIQLQQQQMQQLQQQQQQHQQAANQNNAQQQQQGNQQQQNPSQQQPANKEFNTASLCRFGQETVQDIVSRTQEVFQALKAIQPPNGTAQGANTSNEKKAKVQEQLKTIKLLFKRLRLIYEKCNENCQGMEYTHIESLIPLKEEWDMKSDEKKTSESYRLVCDENKEIMEVPRHLSVVLLWIDDGGNTSQNFPIFQGTQGFITLFTRASQQVILKNR
Length295
PositionHead
OrganismCryptotermes secundus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Polyneoptera> Dictyoptera> Blattodea> Blattoidea> Termitoidae> Kalotermitidae> Cryptotermitinae> Cryptotermes.
Aromaticity0.06
Grand average of hydropathy-0.968
Instability index56.71
Isoelectric point8.31
Molecular weight33557.04
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17749
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.11|      25|      30|      58|      87|       1
---------------------------------------------------------------------------
   34-   72 (32.61/ 9.19)	MSSAQQTGLVNQQpygvgiqpnpqQvlaQQQQQQQQNQQ
   75-   99 (36.65/ 8.90)	IQQQQQIQLQQQQ..........mQ...QLQQQQQQHQ.
  100-  123 (38.86/ 7.09)	.QAANQNNAQQQQ...........Q...GNQQQQNPSQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.43|      31|      36|     198|     233|       2
---------------------------------------------------------------------------
  198-  233 (49.32/51.06)	YE.KCNENCQGMEYTHIESLIPLkeeWdmKSDEKKTS
  236-  267 (53.11/38.23)	YRlVCDENKEIMEVPRHLSVVLL...W..IDDGGNTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.02|      37|      38|     124|     160|       3
---------------------------------------------------------------------------
  124-  160 (60.76/28.42)	QPANKEFNTASLCRFGQETVQDIVSRTQEVFQALKAI
  161-  197 (59.25/27.58)	QPPNGTAQGANTSNEKKAKVQEQLKTIKLLFKRLRLI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17749 with Med30 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MAGPQHSFPSGFPNAQQGTMRNQFGGAPQIGGLMSSAQQTGLVNQQPYGVGIQPNPQQVLAQQQQQ
2) QQMQQLQQQQQQHQQAANQNNAQQQQQGNQQQQNPSQQQPANKEFNTASL
1
86
66
135










Molecular Recognition Features






MoRF SequenceStartStop




NANANA