<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17746

Description Uncharacterized protein
SequenceMVVGPGDHGLQADIIFVIEGTAINGAYLNDLKSNYVIPTLEYFSQGTIEEREYVAESTSTQYGLVIYQAADCLPNPSSDCYGPYSSPQKLLNILDKIELVGGKGESHANIAEGLATALQCFEDLQQRREPNLLPQKHCILVCNSPPYLLPVMESATFAGHSVEQLAVLLQERGIHLSILSPRKIPALFKLYEKAGGDLQTSQTKNYAKDPRHLVLLKGYSLKERPISPTPGPIGHPTANISSMPSSSPNQNNGSPMGTMPPCPGGAAGMPQQQTPMMNSQGVQPAVFRPAQTQGLVMSPQQQHPPQGVMHPNPRNAILFPQQPPQSYPSQGILVQNRPPRWPLPIMQPQQQSRQFPNQSALIAQLTQPSMGPAVNPTALAVSGQFNQNNPPPVMGQQQQMHNMSRVPQQAGQGGSMNLPSMVGPGPGQQQGPGQQAQPPPQPNQSGAPSGQQPQNIGPQQTVATPQQGTPPGGQPSVPQQQPGQPPVVGNQQRQPLWQGVVEWIEKAKSPNDTQKLTRHVPCQVSSNPREGETDLKADSWPQKLIMQLMPKQLIGNIGGAYLKNSKSVLFHPQNCEALESLTKVMSSGFAGCVHFTSISSPQTCDIKVLILLYTAEKRAYLGFIPNDQAAFVDRLRKVIQHQKTTQALIRQQGGQASAGALPAPSAGLSMNPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLSGSMGAQGGGPQPGQQQTNPQQGPQGGIMMSQTNPMTMGGGQITQNVVTSAAQQMQQQVVSLGQQGAGGAGGANSQASPAQLSGLQNAERHLGGPGGNQQQPGAGGPIRGAQGMMPGAPQRPPFDNIEAARQQNLAKIQHLRQTLEAAQQQELQYKSQLEIISHMKIQQLQQNLEMAQQQEMQFKAQMEQEQQKQLRVQLQQLTQQQQQQQRQMAPQGMQPSQPQQQQQPNQQQRMVRPVLANNPGLRHLLQQVLNMQQLGGLRGQQQNPGGQPQQQQQQQQFDDVSSFDFLT
Length996
PositionUnknown
OrganismCryptotermes secundus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Polyneoptera> Dictyoptera> Blattodea> Blattoidea> Termitoidae> Kalotermitidae> Cryptotermitinae> Cryptotermes.
Aromaticity0.04
Grand average of hydropathy-0.734
Instability index72.35
Isoelectric point8.98
Molecular weight108334.79
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17746
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     166.22|      27|      27|     837|     863|       2
---------------------------------------------------------------------------
  433-  458 (40.74/ 9.29)	GQQAQPPPQP.N.QSGAPSGQ.QPQNIGP
  696-  723 (42.73/10.26)	QQQQQQQLSGSMgAQGGGPQP.GQQQTNP
  910-  932 (39.60/ 8.74)	QQQQQRQMAPQ......GMQPsQPQQQQQ
  961-  984 (43.15/10.47)	QQLGGLRGQQQ....NPGGQP.QQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     117.80|      27|      27|     304|     330|       3
---------------------------------------------------------------------------
  249-  278 (38.18/ 8.52)	NQnngSPMGTMPPCPGGAAGMPQQQTPMMN
  304-  328 (42.45/10.46)	.....PPQGVMHPNPRNAILFPQQPPQSYP
  408-  432 (37.16/ 8.05)	QQ...AGQGGSMNLP..SMVGPGPGQQQGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     125.23|      24|      27|     840|     863|       5
---------------------------------------------------------------------------
  347-  367 (26.80/ 9.37)	..QPQQQSRQFPNQSA.....LIAQLTQ.
  830-  847 (24.23/ 7.60)	IEAARQQNL...........aKIQHLRQT
  848-  876 (37.04/16.42)	LEAAQQQELQYKSQLEiishmKIQQLQQN
  877-  902 (37.16/16.51)	LEMAQQQEMQFKAQME...qeQQKQLRVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.47|      14|     192|     139|     152|       6
---------------------------------------------------------------------------
  139-  152 (29.05/13.12)	ILVCNSPP.YLLPVM
  332-  346 (26.42/11.25)	ILVQNRPPrWPLPIM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     152.11|      30|      65|     460|     490|       7
---------------------------------------------------------------------------
  460-  489 (56.88/20.37)	QTVATPQQGTPP.GGQPSVPQQ.....QPGQ.PPVVG
  527-  555 (27.82/ 6.26)	....NPREGETD.LKADSWPQKlimqlMPKQ...LIG
  761-  787 (37.05/ 9.21)	QVVSLGQQGAGGaGGANS..QA.....SPAQ...LSG
  789-  813 (30.36/ 7.70)	......QNAERH.LGGPGGNQQ.....QPGAgGPIRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.81|      14|      50|     167|     185|       8
---------------------------------------------------------------------------
  167-  185 (20.73/23.15)	VL.....LQERGIhlsilSPRKIP
  214-  232 (22.08/11.39)	VLlkgysLKERPI.....SPTPGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.45|      19|     532|      23|      41|      11
---------------------------------------------------------------------------
   23-   41 (35.07/24.53)	INGAYLNDLKSNYVIP....TLE
  557-  579 (29.39/19.45)	IGGAYLKNSKSVLFHPqnceALE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17746 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QALIRQQGGQASAGALPAPSAGLSMNPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLSGSMGAQGGGPQPGQQQTNPQQGPQGGIMMSQTNPMTMGGGQITQNVVTSAAQQMQQQVVSLGQQGAGGAGGANSQASPAQLSGLQNAERHLGGPGGNQQQPGAGGPIRGAQGMMPGAPQRPPFDNIEAARQQNLAKIQHLRQT
2) QGVVEWIEKAKSPNDTQKLTRHVPCQVSSNPREGETDLKADSWP
3) QKQLRVQLQQLTQQQQQQQRQMAPQGMQPSQPQQQQQPNQQQRMVRPVLAN
4) QQLGGLRGQQQNPGGQPQQQQQQQQFDDVSSFDFLT
5) RPISPTPGPIGHPTANISSMPSSSPNQNNGSPMGTMPPCPGGAAGMPQQQTPMMNSQGVQPAVFRPAQTQGLVMSPQQQHPPQGVMHPNPRNAILFPQQPPQSYPSQGILVQNRPPRWPLPIMQPQQQSRQFPNQSALIAQLTQPSMGPAVNPTALAVSGQFNQNNPPPVMGQQQQMHNMSRVPQQAGQGGSMNLPSMVGPGPGQQQGPGQQAQPPPQPNQSGAPSGQQPQNIGPQQTVATPQQGTPPGGQPSVPQQQPGQPPVVGNQQRQPL
646
498
896
961
224
847
541
946
996
496










Molecular Recognition Features






MoRF SequenceStartStop




NANANA