<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17739

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMGSLPSDFAISLKARPSSKTNTNLPGLIERINIERGGFQNITEDSLRREIAEAELGNEDGDKNGTSDEEEEEPDRMKELMTSREAMLGQIETAHQSAIFALDFVSLLLSKDTPEQASLSISPFRRELVGMGTLGADKLHDPRTTDVQKQDNRQIAKGWKSQSLNKTVDSILASASRLEKEIELETRYWQQVLAISDNGWSICRLPNEKHTLGVRFGFSEASPAFKSRSLAALRRNPDGTISLHQGIASSEPQSLRVRIRTGDDQTGSSMSPQPAAEDAPIEALILQARNTIFSEELWQELNREARTMGSYGVQSKDDTLICPLSATKVAVFDLVPLGESNLSGPDDAMAEGVFITLNLLLSYAHRQNQRRRIQPPPPISGQKNIIQPYNLLRAILTRLKHQETAGQLNNLLSPLCRVMETAELKPLPTFTVTSTPGIPPSQYPQAEQTMLSLIERLETIATFSMSETTTVTISARTSPVRSTFGLTLSPDSPLMSICPPPPQVLTSYPALRDYIYYFTACAIATSISTIPSSLGIDDANVEAEAGHWRQTPHPMTLRMILPTSATPSKLPSTKQLSISIQPLASRGRTGIRLRAHWEWNGTEQEGTGTGGRKSSFGYPVLMEDVRKTLKEDSEAGKKSKRGKGEDVYDWVAWEKESGKDWDDGEGEVFRTLESVVADSGK
Length680
PositionHead
OrganismMeliniomyces bicolor E
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes> Helotiales> Hyaloscyphaceae> Hyaloscypha> Hyaloscypha bicolor.
Aromaticity0.06
Grand average of hydropathy-0.481
Instability index55.77
Isoelectric point5.46
Molecular weight74936.58
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17739
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.32|      21|      49|     356|     376|       1
---------------------------------------------------------------------------
  356-  376 (38.88/22.29)	LNLLLSYAHRQNQRRRIQPPP
  407-  427 (37.44/21.22)	LNNLLSPLCRVMETAELKPLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     189.10|      63|     147|      55|     122|       3
---------------------------------------------------------------------------
   55-  122 (93.62/76.15)	LGNED...GDKNGTSdeeEEEPD.RMKELMTSREAMLGQIeTAHQsAIFALDFVSLLLS.KDTPEQASLSISP
  204-  271 (95.49/61.24)	LPNEKhtlGVRFGFS...EASPAfKSRSLAALRRNPDGTI.SLHQ.GIASSEPQSLRVRiRTGDDQTGSSMSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.30|      14|      19|     631|     644|       4
---------------------------------------------------------------------------
  631-  644 (24.43/14.81)	DSEAGKKSKRGKGE
  653-  666 (25.87/16.14)	EKESGKDWDDGEGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.85|      19|      19|     446|     464|       6
---------------------------------------------------------------------------
  446-  464 (30.65/18.82)	EQTMLSLIERLETI.ATFSM
  466-  485 (26.20/15.09)	ETTTVTISARTSPVrSTFGL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17739 with Med17 domain of Kingdom Fungi
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