Description | Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MDTMDSIPGDFAVSLKARPSSKNNANLPSLIERINLERGGFQNITEESLRQEIADAELENEDGDDDASSDEDEEEPDRMKELMTSRDEILGQIEKAHQSAMFALDFVSLLLSKDTPVQASLSISPFLRELVGMGTLGADKLYAPRMTDAQKQDNKQVAKGWKSQSVDKTVDSILASASRLEKEIELETKYWQQVLAVSDSGWSVCRLPKERHTLGVRFGFSEASPAFKNRSLAALRRNPDGTISLDQGIASSEPRTLRVRIRIGNNQTGASASPQPVAEDAPIEALILQARNTIFSEELWQEMNREARTLGSYGVQSRDDTLICPLTSTKTAVFDLVPLGESTLSGPDDNMAEGVFISLNLLLTYAHRQNLRRRTQPPPPISAQKKVILPYNLLRAVLTRLKHQETVGQLNNLLGPLCHVMESAQLKPLPTFKVTSTPGTPPAQLPQAEQTILSLVDRLETIATFSMSESTTITIAARTSSFPVGSTFFVSLPPSSPLMSVCPPPQVLTSYPALRDYIHYFTACAVATSIATIPSSSEIDEADIESQAGQWHQTPHPTTLRTVLLTSTAGSKIPKTKQLSISVQPLTSRKKSGIRLRAYWEWNGKEQQEVTVIDERKSSFGFPVLLEDVQMSPKEDSKNLRRGLGEGVYDWVAWEKESGKLWDDGEGEVFRTLESVLADAGK |
Length | 682 |
Position | Head |
Organism | Hyaloscypha variabilis F |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes> Helotiales> Hyaloscyphaceae> Hyaloscypha> Hyaloscypha variabilis. |
Aromaticity | 0.06 |
Grand average of hydropathy | -0.390 |
Instability index | 55.44 |
Isoelectric point | 5.21 |
Molecular weight | 75209.07 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP17712 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 62.20| 22| 26| 225| 250| 1 --------------------------------------------------------------------------- 225- 250 (32.57/29.40) PafknRSL.AALR..RNPDGTISLDQGIA 254- 278 (29.63/16.71) P....RTLrVRIRigNNQTGASASPQPVA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 117.30| 35| 118| 308| 345| 2 --------------------------------------------------------------------------- 308- 342 (58.96/29.38) RTLGSYGVQSRDDTLICPLTSTKTAVFDLVPLGES 427- 461 (58.34/28.96) KPLPTFKVTSTPGTPPAQLPQAEQTILSLVDRLET --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 61.96| 19| 25| 164| 183| 3 --------------------------------------------------------------------------- 164- 183 (26.57/20.30) QSVDKTVDSILaSASRLEKE 192- 210 (35.39/22.75) QQVLAVSDSGW.SVCRLPKE --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) IRLRAYWEW 2) LPSLIERINLER | 594 27 | 602 38 |
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