<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17699

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMDEIIDKRFERVEKALATLITSISTYNPAPALANDLLSADTELSQGLDILSRHQSNYSKILSLRATSSELDTQIRETLNLLTKTRSELIATPSTDYPTNTNPVSYSELLSYARRISKFTLPPNYREPEVQTDGTTTPKESKSETQTNGTTTPVAATNGITSQTDLGTAMEIDDPAPADGATQTHTSQTSTVKTNTDMWSQWLNPAETQFVPWPSEETIRRGALASIQILVDQGIDPATFDPEKSAELEAERKRVEEEQEGLREQERARLEEERRREMERRMSVSGAAPERREEQPKVFQLETFDDDEDDD
Length310
PositionMiddle
OrganismPezoloma ericae
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes> Helotiales> Hyaloscyphaceae> Hyaloscypha.
Aromaticity0.05
Grand average of hydropathy-0.857
Instability index54.81
Isoelectric point4.54
Molecular weight34801.75
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364141

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17699
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.23|      25|      29|     147|     175|       1
---------------------------------------------------------------------------
  133-  165 (37.47/18.50)	GTT....TPKesksetqtNGTT.TPVAATNGITSQTDL
  166-  197 (29.76/22.07)	GTAmeidDPA......paDGATqTHTSQTSTVKTNTDM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.64|      28|      29|     237|     265|       2
---------------------------------------------------------------------------
  237-  265 (40.58/27.21)	ATFDPEKSAELEaERKRVEEEQEGLREQE
  267-  294 (46.05/26.90)	ARLEEERRREME.RRMSVSGAAPERREEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.59|      20|      47|      57|      76|       3
---------------------------------------------------------------------------
   57-   76 (30.16/16.90)	YSKILSL..RATSSELDTQIRE
   85-  104 (30.97/17.53)	RSELIAT..PSTDYPTNTNPVS
  105-  126 (29.46/16.35)	YSELLSYarRISKFTLPPNYRE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17699 with Med4 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RGALASIQILVDQGIDPATFDPEKSAELEAERKRVEEEQEGLREQERARLEEERRREMERRMSVSGAAPERREEQPKVFQLETFDDDEDDD
2) TLPPNYREPEVQTDGTTTPKESKSETQTNGTTTPVAATNGITSQTDLGTAMEIDDPAPADGATQTHTSQTSTVKTNTDMWSQWLNPAETQFVPWPSEETI
220
119
310
218










Molecular Recognition Features






MoRF SequenceStartStop




1) RRREMERRMSVSGAAPERREEQPKVFQLETFDDDEDDD
2) VSYSELLSYARRIS
273
103
310
116