<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17683

Description Uncharacterized protein
SequenceMSASSGPVAYNNKDSEEESSSGGTSIAATATADTSAVHEPPEDVVVADSGAGGGDDSDMDKGGGTAGDPMDEDSVNPATVFCIRLKQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTESTVFNVIADSPRDSVQFIEWSPSSCPRALLIANFHGRITIWTQPSHGSTSLVKDASCWQREHEWRQDIAVITKWLSGVSPYRWLSSRSGSSTKSPFEEKFLSQQPQAPAGWPNFLCVCSVFSSGSIQLHWSEWPLNQSGTSKWFCTSKGLLGAGPSGIMAADAIVTDSGALHVAGVPIVNPSTVVVWEVTPGFGNGFQATPKTSTTNGIPPSLNPPSWDGFASLASYLFSWQEYFDSESKQGKKLTEQDYSDMVALHCSPVSNFSAYVSPEASAQLAATTTWGSGVTAVAFDPTCGGSVIAIVIVEGQYMSPYDPDEGPSITGWRVQRWESSLEPVVLHPIFGNPTSTFGGQPPMQTVWVTKVNKSIPATDYFKNNPTATPGSTSEGIGMSESDIEKAKRVVFDPFDLPSDVRTLARIVYSAHGGEVAVAFLRGGVHIFSGSSFTPVDNYQINVFSAIASPAFSSTSCCSATVWHDTIKDCTMLKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLMVGVDWWDAVGCTQSAAEDGIVSLNNVIAVLDADFHSLPSTQHRQQYGPGLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVDKPWQASGETLNNIDHEAMAVDPALVLTIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTSGNRSMVISPTTQSTGTPAPGATQGAQNGSASSTASTPIQAWVQGAIAKISNTSDGAPNSNSNSNTTPNPITGPPSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRIQLPRFIGAAAAQRNTDSSAAVHKPQPGKVEEVSSVPTKATSALGRTEELPVAIARAGQQVGSGAKGPEEGPANRSRYGSGNAGQGYTFDEVKVLFLILMDLCKRTSGLAHPLPVSQVGSANIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNTYGGTWSDPDDFGVVDDSSSRMSITTSTSSSDSSNETTATHVHVHEAQRIWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSAFNSQAGNTNTSTQSERETWWISRWVHGCPMCGGTWVRVV
Length1279
PositionTail
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.08
Grand average of hydropathy-0.196
Instability index43.81
Isoelectric point5.88
Molecular weight137454.72
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17683
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.40|      15|      15|     888|     902|       1
---------------------------------------------------------------------------
  888-  902 (28.93/14.44)	GAPNSNSNS.NTTPNP
  905-  920 (26.46/12.58)	GPPSFMPISiNTGTFP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.13|      13|      17|     846|     858|       2
---------------------------------------------------------------------------
  846-  858 (25.05/13.31)	ST.GTPAPGATQGA
  865-  878 (21.08/ 9.91)	STaSTPIQAWVQGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     378.63|     116|     137|     233|     368|       3
---------------------------------------------------------------------------
  195-  271 (87.02/37.09)	SHGSTSLvkdasCWQrehEWRQDIAVITKWL................................................................................sgvspyrwlssrSGSSTKSPFEEKFLSQQPQ....APAGWPNFLCV.CSVF
  272-  411 (180.32/94.18)	SSGSIQL.....HWS...EWPLNQSGTSKWFctSKGLLGAG..PSGIMAADAIVTDSGALHVAGVPIVNPS....TVVVWEVT.......PGFGNgfqatPkTSTTNGIPP.slnppswdgfaSLASYLFSWQEYFDSESKQgkklTEQDYSDMVALhCSPV
  412-  504 (111.28/40.15)	SNFSAYV.....S.P...EASAQLAATTTW...GSGVTAVAfdPTCGGSVIAIVIVEGQYMSPYDPDEGPSitgwRVQRWESSlepvvlhPIFGN.....P.TSTFGGQPP...................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.14|      47|     593|     623|     680|       4
---------------------------------------------------------------------------
  623-  680 (67.74/55.97)	VWHDTIKDcTMLKIIRVL..PPAVPSSQVKANSSTweRAiaER.FWWslmvgVDWWdAVGC
 1219- 1268 (85.41/39.89)	VWKTGLEG.VWYKCIRCLrqTSAFNSQAGNTNTST..QS..EReTWW.....ISRW.VHGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.27|      22|     485|      53|      74|       6
---------------------------------------------------------------------------
   53-   74 (41.74/27.54)	GGDDSDMDKGGGTAGDPMDEDS
  539-  560 (39.53/25.66)	GMSESDIEKAKRVVFDPFDLPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.08|      36|      71|      79|     114|       8
---------------------------------------------------------------------------
   79-  114 (66.43/39.66)	TVFCIRLKQPRSNLQYKMSVPELC.RNFSAVAWCGKL
  152-  188 (59.65/34.88)	TVFNVIADSPRDSVQFIEWSPSSCpRALLIANFHGRI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17683 with Med16 domain of Kingdom Viridiplantae
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