<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17681

Description Uncharacterized protein
SequenceMTATLPSTATPTMNLSLREGLMEMTKSAQNKGTDPLIWGVQLSSSLLSAGITMPSTEVAELLVSHICWTNNLPIAWKYLEKALTLRIAPPMLVLALLSNSVIPNRRSQPAAYRIFLELLKRHIFSLASEVNGPKYHKIMESIDNALHLSQRFGIPSGEPGILLVEFVFAIVWQLLDASIDDEDLLELVPEKRSTWPIKPQEMEIDDHNIGEKKIDRYDRLYKTNTTLAIEIIGEIYRNKLTSRILSLARQNMPVHWRSLIYNLRLLIANSISLRNSKDITPESLLQLTSDNHVIMSPECKTVSLQQFHAVMASGSLVSSTAPTHGASRSSLWLPIDLFLEDTMEGFVVATTSAAETLSGLLKAYQAITQASWQEAFLGLWIAALRLVQRERDALEGPIPRMDTCLCLLLCTTTIAIVNIVDEEESSLVEEDMHMQSETQVVGRCRKSLVSSLQQLGDYEGLLTPPPSVTSLANQAAAKAIMFFSGIGIGSGVSLNDTPLTCSGDLRHLIVEACIARHLLDTSAYLWPGYVKGHANQIQIPHNIAGQMPGWSSLMKGSPLTPPMVHALVSTPASSLAEIEKIYGIAIEGSDNEKISAATVLCGASLTRGWNIQEHTGFLIIKLLSPPVPSDYTGSESHLIASAPFLNVLLVGIASIDCVQIFSLHGLVPHLAGVLMPICEALGSCSPTVSWTLPTGELLCPLGVFSNAFTLLLKLWRFEQPPLEHAIGDITPVGSQLTPEFLLLARNSQLSSCRNSSKHQKKRMRFLKQCDLSASTPVYLDSFPKLKFWYRQHQACIASTLSDLKPGTSVYQIFEALLNMMFRKTNTNTNTGGGGGGQTLTSSTSNSSDDYTLRLKLPAWDILEAVPFVLDAALTACAHGTLSPRELTTGFKDLADFFPASMATIVSYLSAETTRGLWKPASMNGTDWPSPATNLSMVEQNINKILAATGVDVPSLSVGGTCPDTLPLPLAALVSLTITYKVDRISESVLNLAGPALNTLGAGCPWPCMAIIAALWTQKAKRWTDYLVFSASRTVFHHNTDAVVELLKVCFASTLGLNSSNTGGGIGNLLGHGFGSDFSGGIAPVAPGILYLRVHRSVRDVMFMTEEIVSLLMHSVKDIVSTGVPIEKLKNPKTGMILRYGEASLSATMTRIKLAASLGASLVWITGGLNLIQTLIKETMPSWFISVHRLDHTKGDSGVGGMIGMLKGYALAYFMILSGAFAWGVDSVSSASSKRGSILGAHLEFMASALDGKISLGCNKATWRAYVSGFVSLMVSCTPKWTREVDVDVLRSLSKGLRKWDEEELAMALLGIGGVRAMGAAVDFIVESSM
Length1329
PositionTail
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.07
Grand average of hydropathy0.171
Instability index40.40
Isoelectric point6.35
Molecular weight144095.23
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17681
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     411.55|     120|     159|     436|     574|       1
---------------------------------------------------------------------------
  436-  559 (194.29/104.65)	SETQVVGRCRKSLVSSLQQLGDYEG.....LLTPP.PSVTSLANQAAAKAIMFFSGIGIGS....GVSLNDTPLtCSGDLRHLIVEACIARHLLDTSAYLwpGYVKGHANQIQIPHnIAG.QMPGWSSLMKGSPL
  595-  687 (140.37/77.15)	SAATVL..CGASLTRGW.NIQEHTGfliikLLSPPvPS......D..............................YTGSESHLIASAPFLNVLLVGIASI..DCVQIFSLHGLVPH.LAGvLMPICEALGSCSPT
  900-  967 (76.89/28.04)	SMATIVSYLSAETTRGLWKPASMNG.....TDWPS.PATNLSMVEQNINKILAATGVDVPSlsvgGTCPDTLPL.............................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.67|      38|      76|     703|     741|       3
---------------------------------------------------------------------------
  703-  741 (64.01/47.60)	VFSNAFTlLLKLW.RFEQPPLEHAIGDITPVGS..QLTPEFL
  777-  817 (58.65/38.60)	VYLDSFP.KLKFWyRQHQACIASTLSDLKPGTSvyQIFEALL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.80|      17|     158|     999|    1022|       4
---------------------------------------------------------------------------
  968-  984 (27.16/17.32)	PLAALVSLTITYKVDRI
 1006- 1022 (32.64/11.30)	PCMAIIAALWTQKAKRW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.34|      23|      54|      35|      66|       5
---------------------------------------------------------------------------
   48-   76 (35.54/13.37)	SAGITMPSTEVAELLVSHIcwtnnlPIAW
  149-  172 (37.81/15.08)	SQRFGIPSGEPGILLVEFV.....fAIVW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.51|      24|     228|     821|     844|       7
---------------------------------------------------------------------------
  821-  844 (45.47/24.40)	FRKT.NTN.TNTGGGGG...GQTLTSSTS
 1050- 1078 (33.04/15.85)	FASTlGLNsSNTGGGIGnllGHGFGSDFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.24|      14|      30|     381|     394|      12
---------------------------------------------------------------------------
  381-  394 (21.70/16.53)	IAALRLVQRERDAL
  414-  427 (21.54/16.35)	IAIVNIVDEEESSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17681 with Med33 domain of Kingdom Viridiplantae
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