<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17677

Description Uncharacterized protein
SequenceMDLDEFRAILSNSRVDVWEIIDAAITVASSDYAGELKHRRDGIVERLFTQQCSNCDVNQIEQQRNGVIRTISKEVDDDCGREGGGGGGDSPLTPQSIPHDDEEEEDPDPYGGLFDDEQSKILRIKEQLEDPHQTDDAVVDLLQTLADMDLTFTGLKETDIGRHVNQLRKHPSNEVRRLVKQLVRKWKDLVDEWVGSKRGDHAPSTLTDGDSPLVQNIVRSSQNGYHQGPDFGYSPNPHNGSSGSERNNSEPEQRPKAVVSKKPTPSRPLPQSRPMNLASASVPPNRPRKEQNIDLDLDRLASASKRLQENYQEAQNAKKQRKIQVMDIHEIPKPKNGFIAKNKGNFQGRNHR
Length352
PositionUnknown
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.04
Grand average of hydropathy-1.022
Instability index52.58
Isoelectric point5.65
Molecular weight39554.26
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17677
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.57|      17|      22|     260|     281|       1
---------------------------------------------------------------------------
  264-  281 (28.54/26.98)	TPSRPlPQSRPMN.....LASAS
  283-  304 (24.03/ 7.57)	PPNRP.RKEQNIDldldrLASAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.12|      20|      21|      97|     116|       2
---------------------------------------------------------------------------
   76-   92 (24.14/ 8.22)	...DDDCGREGGGGGGDSPL
   97-  116 (38.65/16.55)	IPHDDEEEEDPDPYGGLFDD
  121-  136 (26.32/ 9.47)	ILRIKEQLEDPHQT....DD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.63|      20|      22|     191|     212|       3
---------------------------------------------------------------------------
  191-  212 (33.66/24.65)	DEWV.GSKRGDHAPSTLtdGDSP
  215-  235 (34.97/19.32)	QNIVrSSQNGYHQGPDF..GYSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.10|      23|     117|      20|      42|       4
---------------------------------------------------------------------------
   20-   42 (37.03/30.54)	IIDAAITVASSDY.AGELKHRRDG
   43-   66 (36.07/29.54)	IVERLFTQQCSNCdVNQIEQQRNG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17677 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ISKEVDDDCGREGGGGGGDSPLTPQSIPHDDEEEEDPDPYGGLFDD
2) WVGSKRGDHAPSTLTDGDSPLVQNIVRSSQNGYHQGPDFGYSPNPHNGSSGSERNNSEPEQRPKAVVSKKPTPSRPLPQSRPMNLASASVPPNRPRKEQNIDLDLDRLASASKRLQENYQEAQNAKKQRKIQVMDIHEIPKPKNGFIAKNKGNFQGRNHR
71
193
116
352










Molecular Recognition Features






MoRF SequenceStartStop




1) KILRIKE
120
126