<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17669

Description Uncharacterized protein
SequenceMNMFLEWLSAINFSGGGFCDAAIAEGLAEVLMMFPSLHGIQNHQRHCILVAASNPYPLPTPIYIPPDYIEMQSDSPLSDAETVAQYFKKCLVSLSVICPRQLPKLRAIYNAAKRNPSETDPTIDIMKNPNYLVLISEGFMVARDALTQPEITNLPSNQTPTETDVTPVSGPPQTTSTNDNLQNFTITKKPLNGNPTSSGEAESATLPGTSSTTMPTSEMDSTEVNDSVATTVGPTQQTSSALKSDSSRLYVKLWEVKFAFLM
Length262
PositionUnknown
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.07
Grand average of hydropathy-0.218
Instability index39.81
Isoelectric point4.71
Molecular weight28498.97
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17669
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     150.92|      40|      42|      79|     120|       1
---------------------------------------------------------------------------
   55-   74 (25.46/ 7.90)	....................PYPLP..TPIYI.PPDYIEMQSD
   79-  120 (63.14/32.77)	DAETVAQYFkkCLVSLSVICPRQLPKLRAIYN.AAKRNPSETD
  124-  164 (62.32/28.06)	DIMKNPNYL..VLISEGFMVARDALTQPEITNlPSNQTPTETD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.56|      16|      17|     212|     227|       2
---------------------------------------------------------------------------
  212-  227 (28.69/16.85)	TTM.PTSEMDSTEVNDS
  230-  246 (21.87/11.23)	TTVgPTQQTSSALKSDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.48|      11|      20|     167|     179|       3
---------------------------------------------------------------------------
  167-  179 (16.13/13.51)	PVSGPPqtTSTND
  190-  200 (20.35/ 9.88)	PLNGNP..TSSGE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17669 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALTQPEITNLPSNQTPTETDVTPVSGPPQTTSTNDNLQNFTITKKPLNGNPTSSGEAESATLPGTSSTTMPTSEMDSTEVNDSVATTVGPTQQTSSALKS
145
244










Molecular Recognition Features






MoRF SequenceStartStop




1) PIYIPPDYIE
2) SRLYVKLWEVKFAFLM
61
247
70
262