<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17661

Description Uncharacterized protein
SequenceMANNSQYPGIQPPRPTVAPMGPPQNSYPSVPMQFRPTGPPRAPPQYMPLVSQQFLPVGRPMQHLPPHGMVPPPPPPPAAQAFSVPDGSRVAFSITYNTSATSQVHISAETTSQYQPTSSLNNILPSFPLLQPVEKTPDAPSVPVTSDLLKPVEKAPSDWIEHTSRNGKRYYHNKKTKMSSWEKPLDLMSPIERADASTDWKECIAPDGRKYYYNKVTKQSKWKIPDELKLAREQVKTESKTNEHELTKTKDVDKEHEIEPLVPSVKNSPSSHPHEPVSSPVVVQSGTLLTAELATGPTESSKEVKASEETFPNHVATSLYNNTEDVSVKDAENGTPIGNLEEPEKSSVTNLEEKTVDQETHVYETKQEGKNAFKALLENANVASDWTWDQAMRVIINDRRYSALRSLSERKQAFNEFIGQKKKHEAEERRNKQKKAREEFKKMLDESKEITYTTKWSKAIAIFEDDDRFKAVERFKEREELFEDHIMELEKKEKSKALEEHKKNKKEYIEFLKSCDFLTASSQWRKVQDRLEADESCLRLEKVDRLEIFQEYIHDLEKDEEEQRKLRVEEIRKTERKNRDEFRKLMEGHIASGMLTSKSHWREYCNKVKELPAYLAVSSNSSGATPKDLFEDVLEELEKQYIEDRDRIKEAVKMRKVSMSSSWTLEEFKNAIAEDITSSPLVSAVNLKIVFDELQERVREREEKEAKRRKRLGDDFYLSLNNSKEITSSSRWDDFKPHFEARQENWFTVEESFFKEIFDKHVTELKKARDERKHREDKAKKSLDRRMEKSRREKDRSSKKDKRRKDDSDTDNGERPGDSFSHDDNNNNNNNSNNRRSVRENNNNKEKKHRKRDRSLDHEDDKDRSRDSYRHSLERKRVKQLEQQSSVEYESRHKRYKRDHNRRDDQKEAEDGEVW
Length915
PositionUnknown
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.07
Grand average of hydropathy-1.237
Instability index61.05
Isoelectric point7.17
Molecular weight106849.79
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17661
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.42|      22|      22|     759|     780|       1
---------------------------------------------------------------------------
  759-  780 (33.09/16.80)	DKHVTELKKARDERKHREDKAK
  784-  804 (31.40/15.52)	DRRMEKSRREKD.RSSKKDKRR
  807-  824 (21.93/ 8.38)	DSDTDNGERPGDSFSH.DD...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.68|      18|      18|       7|      24|       2
---------------------------------------------------------------------------
    7-   24 (40.12/23.27)	YPGIQPP.RPTVAPMGPPQ
   27-   45 (34.33/18.84)	YPSVPMQfRPTGPPRAPPQ
   65-   76 (18.24/ 6.50)	.....PP.HGMVPPPPPP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.67|      37|      38|     147|     184|       3
---------------------------------------------------------------------------
  147-  183 (72.23/40.65)	DLLKPVEK..APSDWIEHTSRNGKRYYHNKKTKMSSWEK
  186-  224 (64.44/37.36)	DLMSPIERadASTDWKECIAPDGRKYYYNKVTKQSKWKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.59|      24|      55|     633|     656|       4
---------------------------------------------------------------------------
  565-  589 (26.06/13.34)	KlRVEEIRKTERKNRDEFRKLMEGH
  632-  655 (36.87/22.30)	D.VLEELEKQYIEDRDRIKEAVKMR
  689-  709 (27.65/14.66)	I.VFDELQER.VREREE.KEA.KRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     249.75|      66|      66|     370|     435|       5
---------------------------------------------------------------------------
  370-  418 (69.73/37.26)	..................KNAFKALL.ENAN...VASDWTWDQAMRVIINDRRYSALR.SLSERKQAFNEFI
  419-  486 (99.38/56.34)	GQKKKHEAEERRNKQKKaREEFKKMLdESKE...ITYTTKWSKAIAIFEDDDRFKAVE.RFKEREELFEDHI
  490-  553 (80.63/44.27)	EKKEKSKALEEHKKNKKeYIEF...L.KSCDfltASSQWRKVQD.R.LEADE..SCLRlEKVDRLEIFQEYI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.07|      12|      15|     825|     836|       6
---------------------------------------------------------------------------
  825-  836 (22.33/12.86)	NNNNNNNSNNRR
  841-  852 (21.74/12.32)	NNNNKEKKHRKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.21|      17|      28|     855|     876|       8
---------------------------------------------------------------------------
  855-  871 (30.94/20.32)	SLDHEDDKDR.SRDSYRH
  886-  903 (26.27/ 7.07)	SVEYESRHKRyKRDHNRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      28.45|       8|      66|     660|     669|       9
---------------------------------------------------------------------------
  660-  669 (12.00/10.12)	SSSWtlEEFK
  729-  736 (16.45/ 7.14)	SSRW..DDFK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.34|      22|      47|     284|     309|      10
---------------------------------------------------------------------------
  284-  309 (22.03/25.07)	QSGTLLtAELATgPTESSkeVKASEE
  332-  353 (38.31/21.73)	ENGTPI.GNLEE.PEKSS..VTNLEE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17661 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ELKKARDERKHREDKAKKSLDRRMEKSRREKDRSSKKDKRRKDDSDTDNGERPGDSFSHDDNNNNNNNSNNRRSVRENNNNKEKKHRKRDRSLDHEDDKDRSRDSYRHSLERKRVKQLEQQSSVEYESRHKRYKRDHNRRDDQKEAEDGEVW
2) IPDELKLAREQVKTESKTNEHELTKTKDVDKEHEIEPLVPSVKNSPSSHPHEPVSSPVVVQSGTLLTAELATGPTESSKEVKASEETFPNHVATSLYNNTEDVSVKDAENGTPIGNLEEPEKSSVTNLEEKTVDQETHVYET
3) MANNSQYPGIQPPRPTVAPMGPPQNSYPSVPMQFRPTGPPRAPPQYMPLVSQQFLPVGRPMQHLPPHGMVPPPPPPPAAQAFSV
764
224
1
915
365
84










Molecular Recognition Features






MoRF SequenceStartStop




1) GRKYYYNK
208
215