<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17660

Description Uncharacterized protein
SequenceMEPSSPVEGKSSTPSTPTTAPASVLSTPTLKDADTVSTESMHGSVASIPSLSYNVPQNANRNSESPHHSSSNTAMINSPGSSFPRPPVPGISSSSAPSFSYNIPQTEVAVSGGQSFHSRVVVASEVPKNVSVSPTSLQPPVSGQLAHPSSFIRGMPPPPPVAVPRDTSSNAANFSYNGHHQSVSSAPPVPHSTLGPTSTNFSPTFWMPSGPPFQQPPGRAASALPPPPNTTVASSQQPIYGPYASNPPQGVWIQPAPIGGLSRPAILPYPPPAAFPGSFSLPAQRMPPPSDAQPPGSSTGVPGIVSDSMPSVGSVMPLELPPGTDNSKHVNAVGAEQLDAWSAHRTETGILYYYNSVTGQSTYQKPPGFKGEPERVYAQPTPISWEKCVGTDWSLVTTNDGKRYYYNAKTKLSSWQIPMDVAEQRKKQESDVLNLKEQSMSVPNTSLTEKGSGPLSLSAPAIHTGGRDAISGVPVTSSSALDLIKKKLQDPTAPATSVTPPGGEKSSELNGGDQVGSENGKDKEMLKERGVAPFSKWEKELPKFVFDPRFKLIPSYSARRAIFDHFVRTRAEEERKEKRAAQKAAIEGYRRLLDEAKEDINHHTDYQTFKRKWGHDPRFEALERKDREALLNERVIPLRRSVEEEARAKRAASVSTFKSMLKDNKDISSNSRWYKVKDILRNDPRYKSVRHEDREAIFNEYISELKVCEDEAESIAKAKRDEEEKLRERERALRKRKEREEQEVERVRSKARRKEAIESYQALLVETIKDPQVSWTDAKVKLEKDPQGRAANSYLDQSDLEKLFREHVKSLHDRCAHEFKALLSEVITSEASTKEYEDGKTVLTSWSTAKELLKDDTRYNKMPRKDRESLWRRHVEDLLRRRRKSTVDQQDASEKHGDDRTTAVDSRKYVSASRRNYDPRR
Length921
PositionUnknown
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.07
Grand average of hydropathy-0.834
Instability index59.12
Isoelectric point9.11
Molecular weight101993.63
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17660
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     482.49|      67|      68|     567|     633|       1
---------------------------------------------------------------------------
  490-  539 (56.84/28.64)	DPTAPA................TS.....VTPPGGEKSSE........L..NGGDQVGSENGKDkeML.KERGVAPFS.KWEK
  547-  615 (95.47/53.02)	DPRFKL....I.PSySARRAIFDH....fVRTRAEEERKEKRAAQKAAI..EGYRRLLDEAKED..IN.HHTDYQTFKRKWGH
  616-  682 (80.69/43.69)	DPRFEA....L.ER.KDREALLNE.rvipLRRSVEEEARAKRAA...SV..STFKSMLKDNK.D..IS.SNSRWYKVKDILRN
  683-  728 (49.13/23.78)	DPRYKS....V.RH.EDREAIFNE....yI........SELKVCE.............DEAESI..AK.AKRDEEEKLRE...
  729-  784 (60.85/31.17)	..RERA....LrKR.KERE.............EQEVERVRSKARRKEAI..ESYQALLVETIKD..PQvSWTD...AKVKLEK
  785-  855 (67.25/35.21)	DPQGRAansyL.DQ.SDLEKLFRE....hVKSLHDRCAHEFKALLSEVItsEASTKEYEDGKTV..L....TSWSTAKELLKD
  856-  917 (72.26/38.37)	DTRYNK....M.PR.KDRESLWRRhvedlLRRR....RK.STVDQQDAS..EKHG...DDRTTA..VD.SR.KYVSASRR.NY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     471.67|      68|      68|     156|     223|       2
---------------------------------------------------------------------------
   41-  103 (87.13/28.76)	MHGSVA.SIPSLSYNV.......PQNANrnsESPHH....SSS.NT..AMINS.P..G..........SS........fPR.PP..VPGI....SSSSAPSFSYNI
  104-  178 (77.92/25.02)	PQTEVAvSGGQSFHSRVvvaseVPKNVS...VSPTSL..............QP.P..VS.......GQLAhpssfirgmPPPPPVAVPRD....TSSNAANFSYNG
  179-  240 (106.25/36.52)	HHQSVS.SAPPVPHSTL.....GPTSTN...FSPTFW...MPS.GP..PFQQP.P..GR.......AASA........lPPPPNTTV.......ASSQQP..IY..
  241-  283 (41.32/10.17)	......................GPYASN...PPQGVW...I..........QPaPigGL.......SRPA.......ilPYPPPAAFP...........GSFSLPA
  284-  355 (60.76/18.06)	QRM......PP.PSDAQ.....PPGSST...GVPGIVsdsMPSvGSvmPLELP.P..GTdnskhvnAVGA.........EQLDAWSAHR......TETGILYYYN.
  356-  408 (48.96/13.27)	..............SVT.....G.........QSTYQ...KP...P..GFKGE.P..ER........VYA......qptPISWEKCVGTDwslvTTNDGKRYYYNA
  436-  480 (49.32/13.41)	KEQSMS.....VPNTSL.......TEKG...SGP......LSL.SA..PAIHT.G..GR......dAIS................GVPV.....TSSSA.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.55|      13|      20|       4|      16|       3
---------------------------------------------------------------------------
    4-   16 (22.68/11.45)	SSPVEGKSSTPST
   26-   38 (21.87/10.78)	STPTLKDADTVST
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17660 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GSFSLPAQRMPPPSDAQPPGSSTGVPGIVSDS
2) IPMDVAEQRKKQESDVLNLKEQSMSVPNTSLTEKGSGPLSLSAPAIHT
3) LIKKKLQDPTAPATSVTPPGGEKSSELNGGDQVGSENGKDKEMLKER
4) MEPSSPVEGKSSTPSTPTTAPASVLSTPTLKDADTVSTESMHGSVASIPSLSYNVPQNANRNSESPHHSSSNTAMINSPGSSFPRPPVPGISSSSAPSFSYNIPQTEVAV
5) PKNVSVSPTSLQPPVSGQLAHPSSFIRGMPPPPPVAVPRDTSSNAANFSYNGHHQSVSSAPPVPHSTLGPTSTNFSPTFWMPSGPPFQQPPGRAASALPPPPNTTVASSQQPIYG
6) PSVGSVMPLELPPGTDNSKHVNAVGAEQLD
7) RRKSTVDQQDASEKHGDDRTTAVDSRKYVSASRRNYDPRR
277
417
483
1
127
310
882
308
464
529
110
241
339
921










Molecular Recognition Features






MoRF SequenceStartStop




1) DLIKKKL
2) GILYYYN
3) SRWYKVKDI
482
349
671
488
355
679