<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17660

Description Uncharacterized protein
SequenceMEPSSPVEGKSSTPSTPTTAPASVLSTPTLKDADTVSTESMHGSVASIPSLSYNVPQNANRNSESPHHSSSNTAMINSPGSSFPRPPVPGISSSSAPSFSYNIPQTEVAVSGGQSFHSRVVVASEVPKNVSVSPTSLQPPVSGQLAHPSSFIRGMPPPPPVAVPRDTSSNAANFSYNGHHQSVSSAPPVPHSTLGPTSTNFSPTFWMPSGPPFQQPPGRAASALPPPPNTTVASSQQPIYGPYASNPPQGVWIQPAPIGGLSRPAILPYPPPAAFPGSFSLPAQRMPPPSDAQPPGSSTGVPGIVSDSMPSVGSVMPLELPPGTDNSKHVNAVGAEQLDAWSAHRTETGILYYYNSVTGQSTYQKPPGFKGEPERVYAQPTPISWEKCVGTDWSLVTTNDGKRYYYNAKTKLSSWQIPMDVAEQRKKQESDVLNLKEQSMSVPNTSLTEKGSGPLSLSAPAIHTGGRDAISGVPVTSSSALDLIKKKLQDPTAPATSVTPPGGEKSSELNGGDQVGSENGKDKEMLKERGVAPFSKWEKELPKFVFDPRFKLIPSYSARRAIFDHFVRTRAEEERKEKRAAQKAAIEGYRRLLDEAKEDINHHTDYQTFKRKWGHDPRFEALERKDREALLNERVIPLRRSVEEEARAKRAASVSTFKSMLKDNKDISSNSRWYKVKDILRNDPRYKSVRHEDREAIFNEYISELKVCEDEAESIAKAKRDEEEKLRERERALRKRKEREEQEVERVRSKARRKEAIESYQALLVETIKDPQVSWTDAKVKLEKDPQGRAANSYLDQSDLEKLFREHVKSLHDRCAHEFKALLSEVITSEASTKEYEDGKTVLTSWSTAKELLKDDTRYNKMPRKDRESLWRRHVEDLLRRRRKSTVDQQDASEKHGDDRTTAVDSRKYVSASRRNYDPRR
Length921
PositionUnknown
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.07
Grand average of hydropathy-0.834
Instability index59.12
Isoelectric point9.11
Molecular weight101993.63
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17660
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     482.49|      67|      68|     567|     633|       1
---------------------------------------------------------------------------
  490-  539 (56.84/28.64)	DPTAPA................TS.....VTPPGGEKSSE........L..NGGDQVGSENGKDkeML.KERGVAPFS.KWEK
  547-  615 (95.47/53.02)	DPRFKL....I.PSySARRAIFDH....fVRTRAEEERKEKRAAQKAAI..EGYRRLLDEAKED..IN.HHTDYQTFKRKWGH
  616-  682 (80.69/43.69)	DPRFEA....L.ER.KDREALLNE.rvipLRRSVEEEARAKRAA...SV..STFKSMLKDNK.D..IS.SNSRWYKVKDILRN
  683-  728 (49.13/23.78)	DPRYKS....V.RH.EDREAIFNE....yI........SELKVCE.............DEAESI..AK.AKRDEEEKLRE...
  729-  784 (60.85/31.17)	..RERA....LrKR.KERE.............EQEVERVRSKARRKEAI..ESYQALLVETIKD..PQvSWTD...AKVKLEK
  785-  855 (67.25/35.21)	DPQGRAansyL.DQ.SDLEKLFRE....hVKSLHDRCAHEFKALLSEVItsEASTKEYEDGKTV..L....TSWSTAKELLKD
  856-  917 (72.26/38.37)	DTRYNK....M.PR.KDRESLWRRhvedlLRRR....RK.STVDQQDAS..EKHG...DDRTTA..VD.SR.KYVSASRR.NY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     471.67|      68|      68|     156|     223|       2
---------------------------------------------------------------------------
   41-  103 (87.13/28.76)	MHGSVA.SIPSLSYNV.......PQNANrnsESPHH....SSS.NT..AMINS.P..G..........SS........fPR.PP..VPGI....SSSSAPSFSYNI
  104-  178 (77.92/25.02)	PQTEVAvSGGQSFHSRVvvaseVPKNVS...VSPTSL..............QP.P..VS.......GQLAhpssfirgmPPPPPVAVPRD....TSSNAANFSYNG
  179-  240 (106.25/36.52)	HHQSVS.SAPPVPHSTL.....GPTSTN...FSPTFW...MPS.GP..PFQQP.P..GR.......AASA........lPPPPNTTV.......ASSQQP..IY..
  241-  283 (41.32/10.17)	......................GPYASN...PPQGVW...I..........QPaPigGL.......SRPA.......ilPYPPPAAFP...........GSFSLPA
  284-  355 (60.76/18.06)	QRM......PP.PSDAQ.....PPGSST...GVPGIVsdsMPSvGSvmPLELP.P..GTdnskhvnAVGA.........EQLDAWSAHR......TETGILYYYN.
  356-  408 (48.96/13.27)	..............SVT.....G.........QSTYQ...KP...P..GFKGE.P..ER........VYA......qptPISWEKCVGTDwslvTTNDGKRYYYNA
  436-  480 (49.32/13.41)	KEQSMS.....VPNTSL.......TEKG...SGP......LSL.SA..PAIHT.G..GR......dAIS................GVPV.....TSSSA.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.55|      13|      20|       4|      16|       3
---------------------------------------------------------------------------
    4-   16 (22.68/11.45)	SSPVEGKSSTPST
   26-   38 (21.87/10.78)	STPTLKDADTVST
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17660 with Med35 domain of Kingdom Viridiplantae
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