<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17656

Description Uncharacterized protein
SequenceMDGPMGVGQGQPQQQQEQPQQQAVAKERLNPAVQQQLNLESVKTRALSLYKAITRILEDFELIARTNSVPKWQDVLGQFSMVNLELYNIVEDIKKVSKAFVVHPKNVNGENAGILPVMISSKLLPEIEADDNSKREQLLYAMQNLSVPSQIEKLKARIDMIGAACESAEKVIADTRKTYFGTRQGPTNILTLDKAQAAKIQEQENLLRHAVNHGQGLRIPMDQRQITSSLPSHLVDVLPVNDGIQTISESSGMYMKNTPPMSSNTVNSQGALLQASGSQLMGRAAASPSGPTGASSFDNTTASPLPYANSPRSGNMMNTPSPQQQTQQQQQQQQQHQQQQQQQRQRLMQQLPQHQQQMLAQSLRQNPMTGLAQNQLSQLHDLQGQAQQKYQLHGQNQMAFSQSLGGQQFQGRQLPSGGIQHGIAQSQLNQGNQLGRHLNQMSTTANTALFNAAQATPNNQMMSNMTGMMPSQSMLPRMQFGLSGGNRSLGAQNLSDQVFNMGGNPGSMMPIQQQQQQQQQQQQQQQGGFGNMQQNTQNLQQQQPGMVVPMQQNPQQNHPNFQQHRQNQ
Length568
PositionHead
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.04
Grand average of hydropathy-0.805
Instability index59.95
Isoelectric point9.42
Molecular weight62864.83
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17656
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     489.53|     159|     182|     186|     367|       1
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  186-  366 (245.52/91.52)	PTNILTLDKAQAakiQEQENLLRHavnhGQgLRIPMDQrqitsSLPSHLVDV..LPvNDGIQ.TISES...SGMYM.KNTPPMSSnTVNSqgALLQAS....GSQLMGR.AAASPSG...P.......TGASSFDNTTASPLPYANSPRSGNMMntpsPQQQTQQQQQQQQQHQQQQ....QQQRQRL..........MQQLPQHQQQMLAQSlRQN
  373-  567 (244.00/63.94)	QNQLSQLHDLQG...QAQQKYQLH....GQ.NQMAFSQ.....SLGGQQFQGrqLP.SGGIQhGIAQSqlnQGNQLgRHLNQMST.TANT..ALFNAAqatpNNQMMSNmTGMMPSQsmlPrmqfglsGGNRSLGAQNLSDQVFNMGGNPGSMM....PIQQQQQQQQQQQQQQQGGfgnmQQNTQNLqqqqpgmvvpMQQNPQQNHPNFQQH.RQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.17|      27|      62|      64|      94|       2
---------------------------------------------------------------------------
   64-   94 (37.52/30.06)	ARTNSvpKWQDVLgqFSMVNLELYNIVEDIK
  129-  155 (45.66/23.74)	ADDNS..KREQLL..YAMQNLSVPSQIEKLK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17656 with Med8 domain of Kingdom Viridiplantae
Unable to open file!