<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17647

Description Uncharacterized protein
SequenceMFRTPTTSVGGNGGGIPLTTTTSAQSPNPSDTGDQSHHRSAASRAIQFHPAKPAIIDLFNLYLGRNGRHKSDDSIREPPNKTQKRVIALNRDIHIPPCDGQFLLDFEQLQSQFPGQEQLRAVLESVFVSMIIQCSGHAPRSEFLLFALRSLYSIGYIYWDSFLPSLLSSVTSAEMSHIESPNPESSLISVHGIGSPSQSANETSCTALSPVKSSIKDSPISSLRKLSCEMIIFAMEANLKPSTYADIFYHMMKWLVNLDHKALFEWLQKCLDVVWMLVDEKKCHVPFYELLRSGLQFIENLPDNKSLFTLILEVHRRRDMMAMYMLMLDQHLHCPTFGSQRLLSQAAINMIGESVPHPRYSPITYPSVLGEPLHGEDIAFSIQRGSVDWERAMRCIRHALRNAPSPDWWRRVLLVAPCHRPQPQGSIAGAVFSSDMICEATIDRIVELLKLTNSDVNCWQEWLIYSDIFFLLMKSGCIDFVDFLDKLILCITKEYNQEILKTNHVTWLLAQIIRIELVMTTLSTDSRRVETTKKVLSFHKEARPSDSNNPQNTLLDFITSCQTLRVWSLNSSTREYLNSNQLLKGKQIDEWWRQVSKGDHMMDYMNLDDRSIGMFWVVSNTMAQPACEMVLTWLTSAGHAELPGQNNEKITVMREVNPVPVSLMSGFSINLCLKLALQMEDVMFFGQHAPNIAMVETYCRLLLIYPHSLFRSHLSHLLQRNPETLNKPPATLLVLEILNYRLFSLYRYQGKSKPLMYDITKILSTLKGKRGDHRVFRLAENLCMNLIMSLREFFFVRKEGKGASELTETLNRVAVTNLAIIIKTRGIADVDHLLYLPTMLEQILTNSQHTWSDKTLCYFPGVLREALIGRVDKRGLAIQAWKQAEATVIHQCTQLLSPPDDPTYVMTYISHSFPQHKQYLCAGAWVLMRGHPENINSANLGRVLGEFSPEEVTANVYTLVDVLLCNIHLEIKHGHSLQDVISNVCGNLAHFIWKHELLPPDVLLLALIDRDDDPHALPIVVNLLERQELQQRINFYVANCGSSPEHWLQTGIFNRNELQKALGNHLSWKERSPTYFDDMAARLLPVFPLIIYRLIENNLTDLADRLLQFHSSFLHFYPLNFTFVRDILSYFYPHLPQNLIFRILSILDIKKTPFSESFPQHVNSSNNISPPLEYFTSLLTNLVNNVIPPLLSDKTNQSESTFKPQNQKPFYQIQDPGTHTQLILETTVIEILSLPITPTQIISSFVQIIISSHFQPKFNQSSCLMIQACGLLLAQLPVEFHTPLFAEVAHVIKESSWHCNGYGYVLLDPTWACEENTSTALGNMVALLHAFFSNLPHEWLEKTHLLVNQLRPVSSVGVLKIAFRIIGPLLPRLANAHTLFVKTLELLLSMMVDVFGKNSQQPSNPVEASDITDLIDFLQHVVHYEGEGGPVQTNSKPKADVLSLCGRAIENMRSDLQHLLSHLKTDIL
Length1468
PositionTail
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.09
Grand average of hydropathy-0.069
Instability index46.89
Isoelectric point6.43
Molecular weight166784.60
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17647
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     169.28|      42|      42|    1130|    1171|       1
---------------------------------------------------------------------------
 1130- 1158 (42.80/21.00)	...............YFYPHLPQNLIFRILSILDIKKTPFSES.F
 1159- 1202 (62.34/33.96)	PQHVNSSNNISPPleYF.TSLLTNLVNNVIPPLLSDKTNQSEStF
 1204- 1245 (64.13/35.15)	PQNQKPFYQIQDP.gTHTQLILETTVIEILS.LPITPTQIISS.F
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     646.10|     173|     180|     137|     316|       2
---------------------------------------------------------------------------
    5-  135 (152.16/86.65)	..............................................PTTS.VGGNGG.GIPL..........TTTT...SAQSPNPSDTGDQ..SHHRSAASRAIQF.HPA..KP..A.IIDLFNLYLG..RNGRHKsddSIREPPN......KTQKRVIAL..NRDIHIPpcdgqFlldFEQLQSQ.FPGQEQLRAVlESVFvSMIIQC.S
  137-  316 (281.72/187.82)	HAPRSEFLLFALRSLYSigyiywDSFLPSLLSSVTSAEMSHIESPNPESSLISVHGI.GSPSQ......SANETSC...TALSPVKSSIKDSPISSLRKLSCEMIIFAMEANLKP..STYADIFYHMMKWLVNLDHK...ALFEWLQ......KCLDVVWMLVDEKKCHVP.....F...YELLRSG.LQFIENLPDN.KSLF.TLILEVhR
  318-  484 (212.22/125.97)	RDMMAMYMLMLDQHLHC......PTFGSQRLLSQAAINMIGESVPHPRYSPITYPSVlGEPLHgediafSIQRGSVdweRAMRCIRHALRNAPSPDWWR...RVLLVAPCHRPQPqgSIAGAVFSSDMICEATIDR.....IVELLKltnsdvNCWQ.EWLIYSD.....I.....F...FLLMKSGcIDFVDFL.................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     199.17|      65|     289|     671|     773|       5
---------------------------------------------------------------------------
  673-  754 (95.38/106.32)	LKLALQMedvmfFGQHAPNIAmvetycrllliYPHSLFRSHLSHLLQ.......RNPETLNKPPATLLVLEILNYrLFSLYRYQGKSKP
 1359- 1430 (103.79/45.92)	LKIAFRI.....IGPLLPRLA...........NAHTLFVKTLELLLSmmvdvfgKNSQQPSNPVEASDITDLIDF.LQHVVHYEGEGGP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17647 with Med23 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MFRTPTTSVGGNGGGIPLTTTTSAQSPNPSDTGDQSHHRSAASR
1
44










Molecular Recognition Features






MoRF SequenceStartStop




1) IIDLFNLYLGR
55
65