<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17642

Description Uncharacterized protein
SequenceMRAPMRGGRGGGGFSGGRGGGGFSGGRSGGRGDGSGRGGRGRGGFGGGRGGDMARGGGRGGGRGRGGGRGGRGGGMKGGSKVVVEPHRHEGVFIAKGKEDALCTKNMVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAVLGGVDNIWMKPGSKVLYLGAASGTTVSHVSDLVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKSGGYFVISIKANCIDSTVPAEAVFASEVKKLQAEQFKPMEQVTLEPFERDHACVVGAYRVPKKQKTAA
Length320
PositionUnknown
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.07
Grand average of hydropathy-0.370
Instability index32.71
Isoelectric point10.14
Molecular weight33498.78
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
box C/D RNP complex	GO:0031428	IBA:GO_Central
Cajal body	GO:0015030	IBA:GO_Central
small-subunit processome	GO:0032040	IBA:GO_Central

GO - Biological Function
histone-glutamine methyltransferase activity	GO:1990259	IBA:GO_Central
RNA binding	GO:0003723	IBA:GO_Central
rRNA methyltransferase activity	GO:0008649	IBA:GO_Central

GO - Biological Process
box C/D RNA 3'-end processing	GO:0000494	IBA:GO_Central
histone glutamine methylation	GO:1990258	IBA:GO_Central
rRNA methylation	GO:0031167	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17642
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.46|      16|      20|       7|      26|       1
---------------------------------------------------------------------------
    7-   22 (37.04/ 6.73)	GGRGGGGFSGGRGGGG
   29-   44 (36.42/10.86)	GGRGDGSGRGGRGRGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.48|      14|      17|      46|      62|       2
---------------------------------------------------------------------------
   46-   62 (27.63/14.00)	GGGRGGdmaRGGGRGGG
   66-   79 (32.84/10.78)	GGGRGG...RGGGMKGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.03|      17|      17|     201|     217|       3
---------------------------------------------------------------------------
  181-  204 (20.30/13.72)	TGVVYAVEfshrsgrDLVNMAKKR
  205-  221 (30.72/24.40)	TNVIPIIE.......DARHPAKYR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     189.74|      57|     161|      88|     147|       4
---------------------------------------------------------------------------
   88-  147 (90.76/71.75)	RHEGVFIAKGKedALCTKNMVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKlAAAVLG
  252-  308 (98.98/67.17)	KSGGYFVISIK..ANCIDSTVPAEAVFASEVKKLQAEQFKPMEQVTLEPFERD.HACVVG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17642 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MRAPMRGGRGGGGFSGGRGGGGFSGGRSGGRGDGSGRGGRGRGGFGGGRGGDMARGGGRGGGRGRGGGRGGRGGGMKGGSKVVVEPHRHE
1
90










Molecular Recognition Features






MoRF SequenceStartStop




1) MRAPMRGGRGGGGFSGGRGGGGFSGGRSGGRGDGSGRGGRGRGGFGGGRGGDMARGGGRGGGRGRGGGRGGRGG
1
74