<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17641

Description Uncharacterized protein
SequenceMGSEVELIEETIEEFNDVEHTAIVAVGRNVKESKSLILWALQCFAGMKICLLHIHKPAPLITLVDGKFYESSLKQQVVKAWRELEKQKMHKILNQYRLILDEAGVEAGKVWIEADNVETGIVQTIEQHGIKWLVMGAAAEKLYSKDMSELKSNKSIYVCQNAPPTCQIWFSCKGHLIYTRSMKALSSLPAGEETMLTLRHAIDADVEVKSIRCLENSMKNGCSSSTSNHLMIVDTKDQLVRSLSDMFLEKPQELSSSELHDKLEYAKTDAENSKQKAFEESIRRWRAEEDAKDILHKAETSGNTCMEEITERKAMEAKLSKQIEEIETMKNQRDEFIKELQKSKNQKPELEDRISKARDTEKELEERIIQAVNLLITFKESRDKLQDEVDNARRQIKRLTKYIKEDTTTNLSQAQFYKPSFMEIMEATQDFNQSLKIGEGRNGSVYKGILRHVRVAIKMLPSLGSQSDAEFEHEAEVLSRTRHPNIVTLIGVCSATRSLIYEYLENGSLEDRIISSNSKAKTPPLPWHTRIRIASEISSALIFLHSNNPQIIHGNVTPTNVLLDSNHVSKLSDLGISFVFSKINDPEVSAYIDPEFVESGTLTPSSDVYSFGVVLLRMLTGRPASSVVNDTKCAMEFGNFGEILDLSAGDWPIEHANELADLSLRCCEKNPLKRPNLVNDIWKTFEQMKDRFTVAPVEPECHRKIPSYFVCPIFQEVMKDPYIAADGFTYEEDAIKGWLNSGHKTSPMTNLQLEHCDLLPNHALSYAIQEWQQIS
Length775
PositionTail
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.07
Grand average of hydropathy-0.421
Instability index46.14
Isoelectric point5.59
Molecular weight88008.35
Publications
PubMed=28401891

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17641
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.94|      19|     156|     350|     368|       1
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  350-  368 (30.31/23.86)	LEDRISKARDTEKELEERI
  385-  403 (31.63/25.25)	LQDEVDNARRQIKRLTKYI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.16|      29|     110|     191|     220|       3
---------------------------------------------------------------------------
  180-  195 (16.50/ 6.07)	............RSMKAL.SSLPAGEETM
  197-  225 (48.25/34.09)	TLRHAIDADVEVKSIRCLENSMKNGCSSS
  226-  245 (23.41/ 8.49)	TSNHLMIVDTKDQLVRSLSD.........
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17641 with Med32 domain of Kingdom Viridiplantae
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