<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17636

Description Uncharacterized protein
SequenceMAVGAQRMNQIRYPVVDTSDLMGSRHEIVAETPPTPREVEDRIYVAVGKDLKESQSTLLWALRNSGGRQICILHVHQPADKIPIMGTKFRINQLEAHQVSSYHEKEKQNMRQLLDEYNQICQNAGVTAELYDVDNDSIEKGIVEFIIDHNVRRLVMGAAADKHFSRQSKKAIYVRLQAAASCQIQFICKGNIIFTRQGRVDGVNVSLSSLSLQPNTTSNSGPSSLRSRSVSEITGLPLNSPMRDYHRAMSDNRGIKTSPNFNVELISSSRVSVGRTSDEWSGISQRSRSPSTGSRLSTCSSEVVEPYAIIESGEIELEYGFKEDIDIRHTSPPSVLERGVNDELYDQLVQAMAEADNSKRDAFEESLRRRKAEKAAIEAKRRVKASEALYANEQKLRHEINESLEKTKEEHENIKRELNEVSQELQIALQQKSHLESQIADIDQTVNELEQKMFSAVDLLKNYKKERDELQVECDDALRLLEEMKEKERRDEGSSSNAMSHQFYTEFSFEEIKDATCNFDQSLKIGEGGYGSIFRVSLRHTEVAIKMLHSHSLQGPSEFQQEVSVLSKLRHPNLVTLIGACPDAWIIIYEYLSGGSLEDRLTCKNNTPPLSWQTRIRIAAELCSVLIFLHSCGVVHGDLKPANLLLDQNLVTKLSDFGICRVLSENELTSNNTSLCCRTDPKGTFVYMDPEFLSTGELTSKSDTYSFGVILLRLLTGKPALGLRKEVQYAMNKENLKSVLDPTAGDWPFVQAQQLALLAMNCCDSVRENRPDLASEAWRVLEPMRVSCGLSSFRFGSDGQCQIPHYFICPIFQEIMQDPVVAADGFTYEAEALKGWLDSGHNTSPMTNLDLVNSNLVPNHALRSAIQEWLQQS
Length873
PositionTail
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.06
Grand average of hydropathy-0.444
Instability index48.97
Isoelectric point5.55
Molecular weight98164.71
Publications
PubMed=28401891

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17636
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.79|      24|      55|     343|     396|       1
---------------------------------------------------------------------------
  343-  366 (39.38/63.80)	ELYDQLVQAMAEADNSKRDAFEES
  399-  422 (38.41/10.33)	EINESLEKTKEEHENIKRELNEVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.07|      26|     216|     298|     330|       3
---------------------------------------------------------------------------
  298-  330 (37.71/34.00)	TCSSEvvEPYAIIESGeieleYGFKEDIDIRHT
  516-  541 (48.37/26.45)	TCNFD..QSLKIGEGG.....YGSIFRVSLRHT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.40|      29|      57|     204|     235|       5
---------------------------------------------------------------------------
  204-  235 (43.79/30.50)	NVSL.SSLSLQPNTTSN..SGPSSlRSRSVSeiTG
  262-  293 (43.61/21.45)	NVELiSSSRVSVGRTSDewSGISQ.RSRSPS..TG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.99|      18|      18|     447|     464|       9
---------------------------------------------------------------------------
  447-  464 (29.87/22.89)	NELEQKMFSAVDLLKNYK
  468-  485 (30.12/23.16)	DELQVECDDALRLLEEMK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.70|      14|     618|     175|     188|      10
---------------------------------------------------------------------------
  175-  188 (27.29/16.36)	RLQAAASCQIQ..FIC
  794-  809 (25.41/14.76)	RFGSDGQCQIPhyFIC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17636 with Med32 domain of Kingdom Viridiplantae
Unable to open file!