<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17635

Description Uncharacterized protein
SequenceMFRAPTASGGGGGVPLTSITTQSPNPTDMGDQSHHRAAAARAFQFHPARPAIIDLFNLYLGRSGREKSDDLVREPPNKTQKRVTALNRDLPPRNEQFLLDFEQLQNQFPDREQLRTVSESVLISLVIQCSNHAPRAEFILFALRNLYTIGYINWDTFLPSLLSAVSSAEMSVSVSSTASPPPPITSTSLSQTGMLPSTTIPNSSNFQSSSPASPLISVHGIGSPSQSANEPSTTAISPVKSSDMNNGQMSRSNVLTRDNAISSLRQLCCKIIFSALEASLKPCTHADIFNHMMNWLVNWDQQQQGSDDVDGIKSWKRDKALFEWLHNCLDVIWLLVDDNKCRVPFYELVRSGLQFLQNISDDEALFTLILEIHRRRDMMAMHMQMLDQHIHCPTFGNQRLLAQATTTISGEAAINMRYSPITYPSVLGEPLHGEDIAVCISRGSLDWERALRCIRHALRCTPAPDWWRRVLLVAPCNRQHPQAPTPGAVFTSDMICEANIDRIVELLRLTNSEVNCWQEWLIYSDVFFFLVKSGCIDFVDFVDKLVIRLSEDDHQILRTNHVTWLLAQIIRVELVMHALNADSRKMDTTRKILSFHKEDRSSDPNNPQSILLDFISSCQNLRIWSLSSSSREYLNSEQLQKGKQIDEWWRQVTKGDHMMDYMNLDDRSIGMFWVVSYTMAQPASDTVMSWLTSAGHAELPGPNLQSNERISMMREVHPVPISLLSGFSINLCLKLAFQMEEAMFSGEHVPNIAMVETYTRLLLIQPHSLFRSHLSHLHQRNPSILNKPSATLLVLEILNYRLFSLYRYQGKSKTLMYDVTKILSTLKGKRGDHRVFRLAENLCMNLILSLREFFFVRKEGKGPTEFTETLNRITVVNLAIIIKTRGIADAEHLLYLQTMLEQILATSQHTWSGKTLRYFPPVLCDALIGRMDKRGLAIQKWQLAEGTVINQCNQLLTPSANPTYVMTYLNTSFPEHRRYLCAGAWVLMHGHPENINSANLGRVLREFSPEEVTENMYAMVDVLLHNMQLELQHGHPLQDLIMRACANLAYFIWNHELLPLDILLLALIDRDDDPHALRIVVNLLERQELQQRIKFYVANRGKPEHWLQTGIFKPARLLPVIPLIIYRLIENDAAEAADRVLQFYSTFLHYYPLNITFVRDILAYFYGHLPAKLIFRILNVLDIKKMPFSESFPQHVHSSNAMCPPLDYFGSLLCNIVHNVIPQCKIDTSANGIKSNRNPTVSQTGSTNTFEGQKAFYQIQDPGTYTQLILETAVIEILSLPVTASQIVTALVQIIIHIQPTLTQSNHGFHQASTSSGQGSALPTSPSGGSNDSLGRSRQNGSGFLSRSCYASQQLSCLMIQACGLLLAQLPGEFHVQLYAEASRVIKESWWLSDGKRSVSELDSAVGYALLDPSWAAQDNTSTVIGNVVALLHAFFNNLPQEWLDKTHLLVNHLRPIKSVAVLRIAFRIVGPLLPRLANAHNLFSKTLELLLNMMVDVFGRNSQPSTPVEASEITDLIDFLHHIVHYEGQGGPVQPNSKARPDVLALCGRAIENLRTDVQHLLSHLNTDANASIYAATHPKLFQSPS
Length1587
PositionTail
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.08
Grand average of hydropathy-0.126
Instability index49.24
Isoelectric point6.67
Molecular weight178812.02
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17635
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     145.61|      40|      47|     976|    1021|       1
---------------------------------------------------------------------------
  690-  721 (29.72/11.24)	.........WLTSAGHA.ElpgpNL...QSNERISMM..REVHPVPI.........
  976- 1021 (63.27/50.86)	HRRYLcagaWVLMHGHP.E....NI...NSANLGRVL..REFSPEEVTenMYAMVD
 1025- 1069 (52.62/28.43)	HNMQL.....ELQHGHPlQ....DLimrACANLAYFIwnHELLPLDIL..LLALID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.39|      33|      43|     156|     196|       2
---------------------------------------------------------------------------
  156-  196 (49.36/44.46)	TFLPSllsavSSAEMSvsvSSTASPPPPITST.SLSQTGMLP
  198-  231 (56.02/32.30)	TTIPN.....SSNFQS...SSPASPLISVHGIgSPSQSANEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.03|      26|     363|     281|     309|       6
---------------------------------------------------------------------------
  281-  309 (48.59/34.46)	KPCTHADifnHMMNWLVNWDQQQQGSDDV
  650-  668 (28.17/12.71)	RQVTKGD...HMMDYM.NLDDRS......
  671-  687 (23.26/ 8.50)	............MFWVVSYTMAQPASDTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.60|      21|      43|     500|     522|      11
---------------------------------------------------------------------------
  500-  522 (33.63/25.24)	IDRIVelLRLTNSEVNCWQ....EWLI
  542-  566 (29.97/16.18)	VDKLV..IRLSEDDHQILRtnhvTWLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.15|      31|     749|     727|     760|      12
---------------------------------------------------------------------------
  730-  760 (55.49/48.65)	NLCLKLAFQMEEAMF.SGEHVPNIAMVETYTR
  841-  872 (50.66/33.91)	NLCMNLILSLREFFFvRKEGKGPTEFTETLNR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17635 with Med23 domain of Kingdom Viridiplantae
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