<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17631

Description Pectin acetylesterase
SequenceMINRTHPHSFCYLLKLIFFHSTDFFNWNKVKIRYCDGASFAGHPESEQKVCSFLGIRQDKMQAIRRNKCSRGESNGVGYMQARLLLDMLGKGIESALIDPSALVDKPWSTLQRVKTLSLGHCQFQREDTKEQSDSDALENNPQYRLGVEFS
Length151
PositionTail
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.10
Grand average of hydropathy-0.514
Instability index31.69
Isoelectric point8.62
Molecular weight17320.54
Publications
PubMed=28401891

Function

Annotated function Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. 
ECO:0000256	ARBA:ARBA00003534
ECO:0000256	RuleBase:RU363114
GO - Cellular Component
cell wall	GO:0005618	IEA:UniProtKB-SubCell
extracellular region	GO:0005576	IEA:UniProtKB-KW
GO - Biological Function
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
GO - Biological Process
cell wall organization	GO:0071555	IEA:UniProtKB-KW

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP17631
No repeats found
No repeats found




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17631 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




1) AIRRNK
2) SDALENNPQYRLGVEFS
63
135
68
151