<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17629

Description Uncharacterized protein
SequenceMAVSLGTFSYNNRLWDSVLDLTKKSQDKGSDPLIWAIHLSSQLNSAGVSLPSTDLADLLVSHICWENNNPISWKFLEKALIFNIVPPLLVLALLSTRVIPMRRDQPAAFRLYMELLKRHAFKLKSHVEFQNYEVIMNSIDNVLHLSQIFGMQVKVNDSGSLLLEFIFSVVWQLVEAALGDEGLLEERKFRWNVAQDMELEVGYDGKRNEYHEMLQSRNTIMAIELIGLFLQNKVTSRILLLARRNMPTHWRSFIQDIEVLVVNSSSLRNSKVITPEILLQLISDDRKVVSEENKSSYLQEIHTVMSSSAGLSHKISGSSLWIPLDLVLEDAMDGSQVDTTSSIEIVTRIVKALHALNGNTWHEIFLGLWMAALRLVQRERDPIEGPMPRLDTRLCMLLSITTLVVSDLIEDDETPLQHKLNNQTIENNKETRRRDLVSCLQSLGDYQSLLTPPPLVVSDANQAAAKAMMFTSGINIGSSAYLDFIDIKDMPINFSGNLHHLIVEACIARNLLDTSAYFWPGYVTGHMNQIPRGVPTQVPGWSSFMKGAPLTPIMMNALVSEPASSLAELEKVFEIAVKGSDDEKIAAATILCGASLIRGWNVQEHSAYFITRLLSPPLPVNYPENDSHLIAYAPMLNVLLVGIAPIDCVQIFSLHGLVPQLAGSLMPLCEVFGSCVPNISWTLTSGEEISAHAVFSNAFALLLKLWRFNHPPLEYGVGDVPPVGSQLTPEYLLLMRNSQLVSSGYEDRNRRRLSAVAKTSCPNPIFLDSFPKLKAWYRQHQACLASTLSGLVHSPVHQIVDGLLNMMFRKINRGQPLNSVSGSSTSSGPGSEDLSLRPKFPAWDILEAVPFVVDAALTACDHGRLSPRELCTGLKDLADFLPASLAIIVSYFSAEVSRGVWKPVFMNGTDWPSPAANLSKVEEHIKNILAATRVNVPSLLAGISSPATLPLPLAAFVSLTITYKLDKASQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKKWSDFLVFSSSRTVFLHNNSAVAQLLKSCFTAALSHSGVGALLGHGFGSNFYGEISPVAPGFLYLRVYRSIRDIMFLRDDIISLLIESVKDIASNSKTKGRYGQVSLAASLTKVKLAAQLGASILYISGGQGLVQSLINETLPSWFISVHKTEVEESSNGAMSMLRGYALAHFTVLCGAFAWGIDSRLSASKWRPRFLESHMEFLGSAVNGKITLGCDSVTWRCYVTGFVRLMVGCVPNWVVEVDREVLMRLSKGLRLCNEEELAVGLLEAGGVGTMGAAAELICQIDS
Length1293
PositionTail
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.08
Grand average of hydropathy0.142
Instability index44.75
Isoelectric point6.25
Molecular weight142410.03
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17629
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     225.40|      74|     126|     436|     512|       1
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  436-  512 (122.78/76.35)	LVS.CLQSLGDYQSLLtppPLVV..SDANQAAAKAMM....FTSGINIG.SSAY.LDFIDIKDMPINFSGNLHHLIVEACIARNLL
  558-  640 (102.62/56.43)	LVSePASSLAELEKVF...EIAVkgSDDEKIAAATILcgasLIRGWNVQeHSAYfITRLLSPPLPVNYPENDSHLIAYAPMLNVLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.45|      23|     689|     519|     541|       2
---------------------------------------------------------------------------
  519-  541 (48.72/30.46)	WPGYVTGHMNQIPRGVPTQVPGW
 1199- 1218 (22.29/ 9.95)	.PRFLESHMEFLGSAVNGKIT..
 1226- 1244 (39.45/23.27)	WRCYVTGFV....RLMVGCVPNW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.80|      40|      70|     694|     762|       4
---------------------------------------------------------------------------
  694-  735 (66.45/42.14)	VFSNAFAlLLKLWRFNHPP.LEYGV.GDV.PPVgSQLTPEYLLLM
  765-  807 (58.35/58.30)	IFLDSFP.KLKAWYRQHQAcLASTLsGLVhSPV.HQIVDGLLNMM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.99|      27|      66|     864|     890|       5
---------------------------------------------------------------------------
  864-  890 (45.27/26.94)	RLSPREL.CTG..LKDLADFLP.ASLAIIVS
  933-  958 (42.15/24.54)	RVNVPSL.LAG..ISSPAT.LP.LPLAAFVS
  967-  997 (33.57/17.92)	KASQRFLnLAGpaLESLAAGCPwPCMPIVAS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17629 with Med33 domain of Kingdom Viridiplantae
Unable to open file!